DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment XNP and SWR1

DIOPT Version :9

Sequence 1:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster
Sequence 2:NP_010621.1 Gene:SWR1 / 851934 SGDID:S000002742 Length:1514 Species:Saccharomyces cerevisiae


Alignment Length:1480 Identity:323/1480 - (21%)
Similarity:546/1480 - (36%) Gaps:445/1480 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 TDDSNSSSV----------SRRESATESKSASESESSP-PR----SNTKQSRTHKNVKASGKATV 68
            :|.||..|:          .:||:|...|..||.:.:| |.    :..:.....|..:.|...|:
Yeast   136 SDHSNRKSIVPQKRPIQHLKKREAAKSLKFKSERKENPLPLHEHIAEERYDHIAKVEEPSEAFTI 200

  Fly    69 SSSSD-----------SDQAVANSSANDEE---------KEPVCKIRIVPLEKLLASPKTKERP- 112
            ...||           ||.....:|:.:|:         |:|..|:.:.|.::.:.:|....:| 
Yeast   201 KCPSDDSSFENTSEHYSDNFYFTTSSEEEDIKKKRGRKKKKPRIKLVVHPPKQTITNPLHVVKPG 265

  Fly   113 ---------SRGSQQKNVTI---NDSSDEEPLKGSKLVLPARKSRNKNASIIELSDSEEVDEEEE 165
                     |..|.:.::|:   |...||:     :.:|...|...:|.::       :.|:|.:
Yeast   266 YESLHEYIASFKSLEDDLTLEEYNKYIDEQ-----RRLLSRLKKGIENGAL-------KYDKETD 318

  Fly   166 SLLVAIPLPKEAQQT----KPEKNS----------------------SKASKESIEKRQKAQKEA 204
            ||.   |:..:..:|    ||:..|                      ||..:.|.:.|....|:.
Yeast   319 SLQ---PITSKEIKTIITYKPDPISYFYKQQDLQIHTDHLINQGIHMSKLFRSSTKARIARAKKV 380

  Fly   205 TTSSARAIRSVNGTRRGSLSSERSSRASSSRAESPPRPKRC--------VVR------LKRVS-- 253
            :....:..:.|.|........|...:.|.:|.......||.        ::|      |||:.  
Yeast   381 SQMIEQHFKHVAGAEERKAKEEERHKKSLARFAVQAVKKRWNMAEKAYRILRKDEEEQLKRIEGK 445

  Fly   254 ------LPK-TKPAQKPKKMSSDSEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEEEEERKSS 311
                  |.| |:..:......:|...::|.|..|..  ..|||:.|.|.|...:.:|:||.....
Yeast   446 QHLSKMLEKSTQLLEAQLNQVNDDGRSSTPSSDSND--VLSESDDDMDDELSTSSDEDEEVDADV 508

  Fly   312 GDEEEAAN----------------------SSDSEVMPQRKRRRK-----KSESDKGSSDF---- 345
            |.|...|:                      :..|.|...|.:..|     |.||....|..    
Yeast   509 GLENSPASTEATPTDESLNLIQLKEKYGHFNGSSTVYDSRNKDEKFPTLDKHESSSSESSVMTGE 573

  Fly   346 -------EPEEKQKKKGRKRIKKTSS----------GESDGDGD-DDKQKNKRKHIRKIIKTKDL 392
                   ...|.|.:..|:...||.|          .|||||.| ||.:                
Yeast   574 ESSIYSSSENESQNENDRESDDKTPSVGLSALFGKGEESDGDLDLDDSE---------------- 622

  Fly   393 DLTTKEAAKEEDDRRK-RIEDRQKLYNRI--FVKSESVEINELVLDFDEES-----KKALLQVD- 448
            |.|...::.|.::..| ::::....:.|.  ||.::: |..:.:.|.:|::     ::.|..|| 
Yeast   623 DFTVNSSSVEGEELEKDQVDNSAATFERAGDFVHTQN-ENRDDIKDVEEDAETKVQEEQLSVVDV 686

  Fly   449 --KGLLK-KLKPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLGKTLQVVTLSHTLLVNT 510
              ..||: .|:.:|..|:.::         .|.....:..|||..||||||:|.::|...|....
Yeast   687 PVPSLLRGNLRTYQKQGLNWL---------ASLYNNHTNGILADEMGLGKTIQTISLLAYLACEK 742

  Fly   511 RRTGVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYKDKPTRIFKLNEWFNEGG--V 573
            ...|..  ||:.|.|.:.||..||   .:||....:..|    |.....|..|...|.....  |
Yeast   743 ENWGPH--LIVVPTSVLLNWEMEF---KRFAPGFKVLTY----YGSPQQRKEKRKGWNKPDAFHV 798

  Fly   574 CILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKR 638
            ||:.|.:  ::.::.:   .|::|.|.|           |.||.|.:||.:::..:|:....|:|
Yeast   799 CIVSYQL--VVQDQHS---FKRKRWQYM-----------VLDEAHNIKNFRSTRWQALLNFNTQR 847

  Fly   639 RIVLTGTPLQNNLREYYCMIQFVKPNL------------LGTYKEYMNRFVNPI--TNGQYTDST 689
            |::||||||||||.|.:.::.|:.|..            |..::::..|.|:.|  |...:....
Yeast   848 RLLLTGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDK 912

  Fly   690 ERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTTHREQS 754
            |....:.|     ||::|...:.||..:.:...:|.|:|::||..||:.|:.||..:|:  |.|:
Yeast   913 ETKKTVAK-----LHQVLRPYLLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMS--RAQT 970

  Fly   755 GGDVV-GKGARLFQDFQDLRRIWTHPMNLRVN-------------SDNVIAKRLL---------- 795
            ...:. |....:......||::..||....|.             ||....:|.|          
Yeast   971 KATLASGNFMSIVNCLMQLRKVCNHPNLFEVRPILTSFVLEHCVASDYKDVERTLLKLFKKNNQV 1035

  Fly   796 ------------SNDDSDMEGFICDE------------------------TDEDEAAS--NSSDS 822
                        :.:|.|:..:..:|                        .:|...||  |..|:
Yeast  1036 NRVDLDFLNLVFTLNDKDLTSYHAEEISKLTCVKNFVEEVNKLRETNKQLQEEFGEASFLNFQDA 1100

  Fly   823 CETFK--------SDASMSGLAASSGKV-----------------KKRKTRNGNAGGGDSD---- 858
            .:.||        ....|........|:                 |.|:.:...:...|::    
Yeast  1101 NQYFKYSNKQKLEGTVDMLNFLKMVNKLRCDRRPIFGKNLIDLLTKDRRVKYDKSSIIDNELIKP 1165

  Fly   859 ------------------------SDLEMLG-GLGGGSSVQKDDPSEWWKPFVEERELNNVHHS- 897
                                    .|:..|. ||...|||.::..   .|......|::|..|. 
Yeast  1166 LQTRVLDNRKIIDTFAVLTPSAVSLDMRKLALGLNDDSSVGENTR---LKVMQNCFEVSNPLHQL 1227

  Fly   898 ------------------PKLLILLRLLQQCEAIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNY 944
                              .||..|..||||.:..|.:.|:|:|..:.|||:|.||        ||
Yeast  1228 QTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFL--------NY 1284

  Fly   945 EFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAA 1009
            .              |..|.||||:..:|.|:.:.::||  |:.|..:|::|:|:|||||||..|
Yeast  1285 H--------------GYLYMRLDGATKIEDRQILTERFN--TDSRITVFILSSRSGGLGINLTGA 1333

  Fly  1010 NRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQ 1074
            :.|:.:|..|||:.|.|...|.:|.||.:..:|||.::..|:|.     .:.|:|..||.:|...
Yeast  1334 DTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIES-----NILKKANQKRQLDNVV 1393

  Fly  1075 ISR------HYNQTDLMELYSYEL-KPSTEREMPILPKDRLFAEILTEHEKLIFKYHEHDSL--- 1129
            |..      ::::..:.:|...|| :.::..:.|::....:.|:...:.|:|:.:..:.|.:   
Yeast  1394 IQEGDFTTDYFSKLSVRDLLGSELPENASGGDKPLIADADVAAKDPRQLERLLAQAEDEDDVKAA 1458

  Fly  1130 --------LEQEEHENLT-------EEERKSAWAEYEAEKTRTVQASQYM 1164
                    ::.::.:..|       |||..:...|||.    |....:||
Yeast  1459 NLAMREVEIDNDDFDESTEKKAANEEEENHAELDEYEG----TAHVDEYM 1504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XNPNP_651398.1 DTHCT 258..335 CDD:285332 20/103 (19%)
SNF2_N 458..779 CDD:278600 90/337 (27%)
DEXDc 483..646 CDD:238005 49/164 (30%)
Helicase_C 913..1035 CDD:278689 44/121 (36%)
SWR1NP_010621.1 HSA 340..>393 CDD:413434 7/52 (13%)
HepA <659..1413 CDD:223627 196/827 (24%)
DEXQc_SRCAP 696..932 CDD:350761 73/274 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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