DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment XNP and ATRX

DIOPT Version :9

Sequence 1:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster
Sequence 2:NP_001184937.1 Gene:ATRX / 837382 AraportID:AT1G08600 Length:1479 Species:Arabidopsis thaliana


Alignment Length:1353 Identity:380/1353 - (28%)
Similarity:604/1353 - (44%) Gaps:276/1353 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 AATPLTTDDSNSSSVSRRESATESKSASES---------------ESSPPR---SNTKQSRTHKN 59
            ||..:|..|...:::...|  |||.:..|.               ||..|.   :...:.|.|..
plant   164 AAEMMTFKDEWEATLDELE--TESATLLEQLDGAGIELPKLYEMIESQAPNGCYTEAWKQRAHWV 226

  Fly    60 VKASGKATVSSSSDSDQAVANSSANDEEKEPVCKI--RIVP------LEKLLASPKTKERPSRGS 116
            .....|.||.|       :||:........||.|.  :::.      |||.||....||..:..|
plant   227 GTQVTKETVES-------LANAERFLHTHRPVRKRHGKLLEEGASGFLEKKLADGAVKESLAGTS 284

  Fly   117 Q----QKNVTINDSSDEEPLKGSK---LVLPARKSRNKNASIIELSDSEEVDEEEE--------S 166
            :    ..|...::..||....|||   .|..|.......|..:|.....||:|.||        .
plant   285 ELDWSSLNKVFSEKRDESVSFGSKQWASVYLASTPHQAAAMGLEFPGVNEVEEIEEIDASLADPF 349

  Fly   167 LLVAIPLPKEAQQTKPEKNSSKASKESIE--------------KRQKAQKEATTSSARAIRSVNG 217
            |..||...:|...|:.:|.:....||..:              :|:|..|:....:|..:...:.
plant   350 LADAIDNERELALTEEQKTNYIRVKEEDDITCDRVLQLRLKRKRRKKRSKQVIRCAAENMDDDSV 414

  Fly   218 TRRGSLSSERSSRASSSRAESPPRPKRCVVRLK------RVSLPKTKPAQKPKKMSSDSEEAATT 276
            ...|:.::...::......|:..:.....|.::      ...:.|..|:   ..::.|::...:.
plant   415 YLDGNNTTPNFAKDQVKSPETSTQVHNSEVNIEENGNFSNSDVDKMTPS---THINVDAKRDDSQ 476

  Fly   277 SKKSRQRRSKSESEADSDYEAPAAE-------EEEEEERKSSGDEE---------EAANSSDSEV 325
            :..:..|.:.....|...:..|..|       :...|:|.|..|:.         ..|:..|...
plant   477 NPANNFRCTACNKVAVEVHSHPLLEVIVCMDCKRSIEDRVSKVDDSLERHCEWCGHIADLIDCRT 541

  Fly   326 MPQ-------RKRRRKKSESDKGSSDFE-------P------EEKQKKKGRKRIKKTSSGESDGD 370
            ..:       ::...::..|:..||.::       |      |.::..:.:|.|:.:|...||..
plant   542 CEKLFCASCIKRNIGEEYMSEAQSSGWDCCCCSPIPLQRLTLELEKAMRDKKSIELSSDSSSDSS 606

  Fly   371 GDDD--------------KQKNKRKHIRKIIKTKDL--DLTTK---EAAKEEDDRRKRIEDRQKL 416
            .|::              |:|:|:| ||:||...:|  |..||   |.|::|..|..:...|.|.
plant   607 SDNNSVDTDADVNVTISSKKKSKKK-IRRIIDDAELGKDTRTKIAIEKARQERLRSLQFSARYKT 670

  Fly   417 YNRI-FVKS--ESVEINEL-------VLDFDEESKKALLQVDKGLLKKLKPHQVAGVKFMWDACF 471
            .:.: .|||  |..|:..|       :::...|..:..::|.:.:..|||.|||.|::|||:...
plant   671 ISSMGDVKSIPEGAEVEVLGDAHSGYIVNVVREIGEEAVRVPRSISAKLKVHQVTGIRFMWENII 735

  Fly   472 ETLK--ESQEKPGSGCILAHCMGLGKTLQVVTLSHTLLVNTRRTGVDRVLIISPLSTVNNWAREF 534
            :::.  :|.:| |.||||||.||||||.||:...:|.: .....|:...||::|::.::||..||
plant   736 QSISRVKSGDK-GLGCILAHTMGLGKTFQVIAFLYTAM-RCVDLGLKTALIVTPVNVLHNWRSEF 798

  Fly   535 TSWMKFANRNDIEVYDISRYKDKPTRIFKLNE------------WFNEGGVCILGYDMYRILANE 587
            ..||      ..||        ||.|||.|.:            |..:|||.::||..:|.|:  
plant   799 EKWM------PSEV--------KPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTNFRNLS-- 847

  Fly   588 KAKGLRKKQREQ-LMQALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNL 651
            ..:|::.....: :..||.| |||::||||.|::||.|...::|:.:::.:|||.|||:||||||
plant   848 LGRGVKDLNAARGICNALRD-GPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNL 911

  Fly   652 REYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDY 716
            .|||||:.||:...||:..|:.|||.|||.|||:.:||..|:::|..|||||::.|:|.:||.|.
plant   912 MEYYCMVDFVREGFLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDM 976

  Fly   717 SVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTTHREQSGGDVVGKGARLFQDFQDLRRIWTHPMN 781
            :|:...||||..:|:...||.||:.||..::..:....|..........|..:|.|.:|..||..
plant   977 NVVKKDLPPKTVFVISVKLSPLQRILYQRFLELYGFSDGRTDERMRKNFFAAYQVLAQILNHPGI 1041

  Fly   782 LRVNSDNVIAKRLLSNDDSDMEGFICDETDEDEAASNSSDSCETFKSDASMSGLAASSGKVKKRK 846
            .::.|:         :..:...|.|.|..|:..:..|...:..|.:...:|:.|   ..||    
plant  1042 PQLRSE---------DSKNGRRGSIVDIPDDCSSDENIDYNMVTGEKQRTMNDL---QDKV---- 1090

  Fly   847 TRNGNAGGGDSDSDLEMLGGLGGGSSVQKDDPSEWWKPFVEERELNNVHHSPKLLILLRLLQQCE 911
                                   ...:|||    ||...:::........|.|:::||.:|....
plant  1091 -----------------------DGYLQKD----WWVDLLQKNNYKVSDFSGKMILLLDILSMSA 1128

  Fly   912 AIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQRE 976
            .:|||.||||||:.:||:||.:||.|..:.|..:|          |..|||::|:||.....:|:
plant  1129 DVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKF----------WKKGKDWYRIDGKTESSERQ 1183

  Fly   977 AMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCY 1041
            .:..:||...|.|.:..|||||||.|||||.|||||:|.|.||||::|.|:|||.:|:||.||.:
plant  1184 KLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRYGQKKPVF 1248

  Fly  1042 IYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQISRHYNQTDLMELYSY-----------ELKPS 1095
            .|||:|.||:|:|:|:|||.|:..|.||:|.||:.|..::.:::.|:.:           |:...
plant  1249 AYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFDDDDEKSEAVTEISKQ 1313

  Fly  1096 TER------EMPIL----------PKDRLFAEILTEH-EKLIFKYHEHDSLLEQEEHENLTEEER 1143
            .|.      |..||          ..|:|...:|..| ...|..:|||::||::.|.|.||:||:
plant  1314 NEAGHSNLVEQAILWTKKATLSRVGGDKLMENLLQRHGPNWISSFHEHETLLQENEEERLTKEEK 1378

  Fly  1144 KSAWAEYE----------------------AEKTRTVQASQYMSYDRNAFGNQ 1174
            ..||..|.                      :..|:|....|...::|:.|.|:
plant  1379 DMAWEVYRRALEWEEVQRVPFSESPVVPKPSPSTQTEPLPQPKGFNRSRFVNR 1431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XNPNP_651398.1 DTHCT 258..335 CDD:285332 12/99 (12%)
SNF2_N 458..779 CDD:278600 129/335 (39%)
DEXDc 483..646 CDD:238005 63/175 (36%)
Helicase_C 913..1035 CDD:278689 59/121 (49%)
ATRXNP_001184937.1 PRK02224 <1..>195 CDD:179385 9/32 (28%)
ADDz_ATRX 481..575 CDD:277252 13/93 (14%)
HepA <647..1278 CDD:223627 250/702 (36%)
DEXHc_ARIP4 719..959 CDD:350827 104/258 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 225 1.000 Domainoid score I687
eggNOG 1 0.900 - - E2759_KOG1015
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 441 1.000 Inparanoid score I406
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto4213
orthoMCL 1 0.900 - - OOG6_104269
Panther 1 1.100 - - O PTHR45797
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2684
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.820

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