DRSC/TRiP Functional Genomics Resources

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Protein Alignment XNP and rad54l2

DIOPT Version :9

Sequence 1:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster
Sequence 2:NP_001076824.1 Gene:rad54l2 / 733747 XenbaseID:XB-GENE-5829376 Length:1396 Species:Xenopus tropicalis


Alignment Length:1077 Identity:345/1077 - (32%)
Similarity:526/1077 - (48%) Gaps:241/1077 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 SLPKTKPAQKPKKMSSDSEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEEEEERKSSGDEEEA 317
            |:..::|...|:.|..:.|:                 :.|.|.|    |||||:|..:.||:|: 
 Frog     5 SISGSEPELDPEDMEEEEED-----------------DEDDDEE----EEEEEDEEDNDGDDED- 47

  Fly   318 ANSSDSEVMPQRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKTSSGESDGDGDDDKQK----- 377
                         .::..:|..:.::..|...:|.::|.||  .|:||:|..:.|:.|:|     
 Frog    48 -------------DKQDINEKSQNAALGEDSPEQGEEGWKR--STTSGQSGQESDEAKKKRLQKP 97

  Fly   378 -NKRKHIRKIIKTKDLDLTTKEAAKEEDDRRKRIEDRQKLY---------NRIFVKSE----SVE 428
             |.|::|||:::...|:..||.|.:||.:||||:|.::|.|         :..|::.|    :.:
 Frog    98 ANLRRNIRKLLREDQLESVTKTAQQEELERRKRLEQQRKDYPLPLTLPPVSLDFLQEEIELRAAD 162

  Fly   429 INELV-------LD-----FDEESK---------------------------------------- 441
            :::||       ||     .|:|.|                                        
 Frog   163 VSQLVKSQEIICLDSSSGESDDEGKVKSHSIKDEIIELSSGEEDNLQISDNADSTNEVDGDITTE 227

  Fly   442 -------KALLQVD---------------------KGLLKKLKPHQVAGVKFMWDACFETLKESQ 478
                   .||.|.|                     ..|.:.:|.||:.|::|::|...|:|:...
 Frog   228 NSGSHVNDALNQADHLGRVLVNINHPPNEKDIFLAPQLARAVKSHQIGGIRFLYDNLVESLERFS 292

  Fly   479 EKPGSGCILAHCMGLGKTLQVVTLSHTLLVNTRRTGVDRVLIISPLSTVNNWAREFTSWM----- 538
            ...|.||||||.|||||||||::....|.   :.|....||.|.|::|:.||..||..|:     
 Frog   293 GSSGFGCILAHSMGLGKTLQVISFLDVLF---QHTSAKTVLAIVPVNTLQNWLAEFNMWLPPPES 354

  Fly   539 ---------------KFANRNDIEVYDISRYKDKPTRIFKLNEWFNEGGVCILGYDMYRILA--- 585
                           |....||       .:|....|...:|:|..:|||.::||:|||:|:   
 Frog   355 LPKDHNQELVQPRAFKVHTMND-------EHKTTAARAKVVNDWATDGGVLLMGYEMYRLLSLKK 412

  Fly   586 ---------NEKAKG-----LRKKQREQLM-----QALVDPGPDLVVCDEGHLLKNEKTSISKAV 631
                     ::||.|     |.::.|:|.|     :||..||||:|:|||||.:||...|.|:|:
 Frog   413 SFTAGRKKKSKKAAGPVIIDLDEEDRQQEMLKGIEKALSRPGPDVVICDEGHRIKNCHASTSQAL 477

  Fly   632 TRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLM 696
            ..:|::||:||||.||||||.||:||:.||:|:.|||.:|:.|.|..||.|||..|||.:|.|||
 Frog   478 KNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCVDSTPQDKRLM 542

  Fly   697 KHRSHILHKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTTHREQSGGDVVGK 761
            ::|||:||.||||.:|||.::||...||.|.|:|:...||::|:.||..:|...|:  .|:....
 Frog   543 RYRSHVLHSLLEGFVQRRGHTVLKAQLPFKEEHVILVRLSKIQRDLYTEFMNRFRD--AGNSGWL 605

  Fly   762 GARLFQDFQDLRRIWTHPMNLRVNSDNVIAKRLLSNDDSDMEGFICDETDEDEAASNSSDSCETF 826
            |....:.|....:||.||        :|:.:.|...:       :.:|.|.|.....:::.|.  
 Frog   606 GLNPLKAFCVCCKIWNHP--------DVLYEALQKEN-------LANEQDLDVEDLGTNNRCN-- 653

  Fly   827 KSDASMSGLAASSGKVKKRKTRNGNAGGGDSDSDLEMLGGLGGGSSVQKDD---PSEWWKPFVEE 888
                      |.|||:|......|...|  ..:..:.|.|:....|.:|.:   ..||.|..:.:
 Frog   654 ----------AQSGKIKVEPNSLGALMG--ETAHTKQLQGIVLNPSHEKANQVVTYEWAKEILSD 706

  Fly   889 RELNNVHHSPKLLILLRLLQQCEAIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDF 953
            .....:.:|||:::|..|:::...:|||:|||||||.:|.::|.||    :..|.....|..|..
 Frog   707 YIPGQLQNSPKMVLLFHLIEESMRMGDKILVFSQSLSTLSIMEEFL----AKRKMPIPAGSDGQE 767

  Fly   954 KGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVS 1018
            ...|....:|:|||||.|..:||.:..|||:.:|.:..|||:|||||.||:||:.|||||:||.|
 Frog   768 GHTWIRNVNYYRLDGSTSASERERLINQFNDPSNEKVWLFLLSTRAGCLGVNLIGANRVVVFDAS 832

  Fly  1019 WNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQISRHYNQTD 1083
            |||.||.|::.||||:||.||||||||::..|:|:|:|:||:.||..:.||:|:.....::.:.:
 Frog   833 WNPCHDAQAVCRVYRYGQRKPCYIYRLVSDFTLEKKIYDRQITKQGMSDRVVDDLNPEVNFTRRE 897

  Fly  1084 LMELYSY-ELKPSTEREMPILPKDRLFAEIL----TEHEKLIFKY-HEHDSLLEQEEHENLTEEE 1142
            :..|..: |.:|...|:.  |........:|    .::..||.|. .:|:|||...:.:.||..|
 Frog   898 VENLLHFVEEEPDASRQH--LDSSSFHEAVLQKACLQYPHLITKEPFQHESLLLDRKEQKLTLAE 960

  Fly  1143 RKSAWAEYEAEK------TRTVQASQYMSYDRNAFGN 1173
            :|:|...||.||      ||......|.:.|.| .||
 Frog   961 KKAAKRGYEEEKRASVPYTRPSYTQYYPAPDHN-LGN 996

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XNPNP_651398.1 DTHCT 258..335 CDD:285332 16/76 (21%)
SNF2_N 458..779 CDD:278600 144/362 (40%)
DEXDc 483..646 CDD:238005 74/204 (36%)
Helicase_C 913..1035 CDD:278689 61/121 (50%)
rad54l2NP_001076824.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..103 32/134 (24%)
HepA 88..902 CDD:223627 288/858 (34%)
DEXHc_ARIP4 269..545 CDD:350827 114/285 (40%)
DEAH box 461..464 2/2 (100%)
LXXLL motif 1 549..553 2/3 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1117..1168
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1194..1250
LXXLL motif 2 1273..1277
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1340..1396
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D111318at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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