DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment XNP and Chd8

DIOPT Version :10

Sequence 1:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster
Sequence 2:XP_006251970.1 Gene:Chd8 / 65027 RGDID:620696 Length:2589 Species:Rattus norvegicus


Alignment Length:1399 Identity:296/1399 - (21%)
Similarity:511/1399 - (36%) Gaps:395/1399 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NPNARHTDAATPLTTDDSNSSSVSRRESATESKSASESESSPPRSNTKQSRTHKNV---KASGKA 66
            ||.|    ...||....:.:|:.::.||...:....:.:|..|:.       |::|   ...||.
  Rat   261 NPGA----TGPPLKPAVTLTSTPAQGESKRITLVLQQPQSGGPQG-------HRHVVLGSLPGKI 314

  Fly    67 TVSSSSDSDQAVANSSANDEEK---------EPVCKIRIVPLEKLLASPKTKERPSRGSQQKNVT 122
            .:..:..:....|.|:.....|         :|..||:|||     ..|.::.:|......:.:|
  Rat   315 VLQGNQLAALTQAKSAQGQPAKVVTIQLQVQQPQQKIQIVP-----QPPSSQPQPQPPPSAQPLT 374

  Fly   123 INDSSDEEPL-----KGSKLVLPAR----------KSRNKNASIIELSDSEEVDEEEESLLVAIP 172
            ::.....:.:     .|.:|.:|.:          :..:...|::::..:.||.........|  
  Rat   375 LSSVQQAQIMGPGQNPGQRLSVPLKMVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASCA-- 437

  Fly   173 LPKEAQQTKPEKNSSKASKESIEKRQKAQKEATTSSARA----------------IRSVNGTRRG 221
             |..|.:|..|:|   ...|..:|::||.:....:.|||                :.||.....|
  Rat   438 -PHTAGKTGMEEN---RRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEG 498

  Fly   222 SLSSERSSRASSSRAESPPRPKRC----------------VVRLKRV-------SLPKTKPAQKP 263
            .....:.|.....:.|.|.:.|..                ||..||.       |..:..|||.|
  Rat   499 EKKRRKKSSGERLKEEKPKKSKTAAASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSP 563

  Fly   264 KKMSSDSEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEEEEERKSSGDEE------EAANSSD 322
            ::   |.|.:....:.:||.:.|..:|   |.:....::|||||...:|..:      |.....|
  Rat   564 RE---DEESSIQKRRSNRQVKRKKYTE---DLDIKITDDEEEEEVDVTGPIKPEPILPEPVPEPD 622

  Fly   323 SEVMPQRK-RRRKKSESDKGSSD----FEPEEKQKKKGR--------KRIKKTSSGESDGDGDDD 374
            .|.:|..: .....||.|....|    ....:|:...|:        .:.|..|....:......
  Rat   623 GETLPSMQFFVENPSEEDAAIVDKVLSMRVVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQ 687

  Fly   375 KQKNKRKHIR-KIIKTKDLDLTTKEAAKEEDDRRKRIEDRQKLYNRIFVKSESVE-------INE 431
            .:|:||.|.: |..|||...:.......||......:|     .:||..:|.||:       |..
  Rat   688 LEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFNPDYVE-----VDRILDESHSVDKDNGEPVIYY 747

  Fly   432 LV----LDFDEESKKALLQVDKGLLKKLK--------------PHQVAGVKFMWDACFETLKESQ 478
            ||    |.:::.:.:....||:|.:::.|              |...|..|......::...:.:
  Rat   748 LVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVNRPQANAWKKLELSHEYKNRNQLR 812

  Fly   479 EKPGSG-------------CILAHCMGLGKTLQVVTLSHTLLVNTRRTGV-DRVLIISPLSTVNN 529
            |....|             ||||..||||||:|    |...|......|: ...|:|:||||:.|
  Rat   813 EYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQ----SIAFLQEVYNVGIHGPFLVIAPLSTITN 873

  Fly   530 WAREFTSWMK---------FANRNDIEVYDISRY-KDKPTRI----FKLNEWFNEGGVCILGYDM 580
            |.|||.:|.:         .|:|..|:.|::  | ||...|:    :|.:       ..|..::|
  Rat   874 WEREFNTWTEMNTIVYHGSLASRQMIQQYEM--YCKDSRGRLIPGAYKFD-------ALITTFEM 929

  Fly   581 YRILANEKAKGLRKKQREQLMQALVDPGPDL-------VVCDEGHLLKNEKTSISKAVTRMRTKR 638
                                   ::...|:|       |:.||.|.|||....:..::..|..:.
  Rat   930 -----------------------ILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEH 971

  Fly   639 RIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRSHIL 703
            :::||||||||.:.|.:.::.|::|:...:..|::..|.:..|..|...               |
  Rat   972 KVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQK---------------L 1021

  Fly   704 HKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTTHREQSGGDVVGKGA----- 763
            ..:|:..:.||....:...|.||.|.::...|:.:|:|.|...:     :.....:.|||     
  Rat  1022 QAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAIL-----EKNFSFLSKGAGHTNM 1081

  Fly   764 -RLFQDFQDLRRIWTHPMNLRVNSDNVIAKRLLSNDDSDMEGFICDETDEDEAASNSSDSCETFK 827
             .|.....:||:...||..:....:.::           ||               ..::|....
  Rat  1082 PNLLNTMMELRKCCNHPYLINGAEEKIL-----------ME---------------FREACHIIP 1120

  Fly   828 SDASMSGLAASSGKVKKRKTRNGNAGGGDSDSDLEMLGGLGGGSSVQKDDPSEWWKPFVEERELN 892
            .|..:..:..|:|                                                    
  Rat  1121 QDFHLQAMVRSAG---------------------------------------------------- 1133

  Fly   893 NVHHSPKLLILLRLLQQCEAIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCW 957
                  ||:::.:||.:.:|.|.|:|:|||.::.||::|.:|.     .:.|.:|          
  Rat  1134 ------KLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLI-----QRRYLYE---------- 1177

  Fly   958 TSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPS 1022
                   |:||......|:|...:|:...:.|. :||:.||||||||||.||:..:|||..|||.
  Rat  1178 -------RIDGRVRGNLRQAAIDRFSKPDSDRF-VFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 1234

  Fly  1023 HDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQISRHYNQTDLMEL 1087
            :|.|:..|.:|.||.|...:||||...:.|::::::...|....|.|: :....|..|.|.:.:.
  Rat  1235 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVL-QSMSGRDGNITGIQQF 1298

  Fly  1088 YSYELKPSTEREMPILPKDRLFAEILTE-HEKLIFKYHEHDSLLEQEEHENLTEEERKS---AWA 1148
                    :::|:..|.:...:|.|:.| .|...|...:.|.:|.:.......|.|.|.   |.|
  Rat  1299 --------SKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKA 1355

  Fly  1149 EYEAEKTRTVQASQYMSYDRNAFGNQVMGQFGNASGSVTSNKIFGFRSDILLQLLNMKISKDHQE 1213
            .:.|.:.||     .:|.|...|..:                 :..::|:.:.|||.|       
  Rat  1356 SFVASENRT-----DISLDDPNFWQK-----------------WAKKADLDMDLLNSK------- 1391

  Fly  1214 LNQNQVIQLVPTYLQQL--YNEMNNGDPTMYKDL 1245
               |.::...|...:|.  ::.:.:.|...:.||
  Rat  1392 ---NNLVIDTPRVRKQTRHFSTLKDDDLVEFSDL 1422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XNPNP_651398.1 PTZ00121 <173..>460 CDD:173412 78/370 (21%)
HepA <382..1071 CDD:440319 173/755 (23%)
DEXHc_ATRX 455..699 CDD:350826 68/292 (23%)
Chd8XP_006251970.1 PHA03247 <68..279 CDD:223021 6/21 (29%)
SP1-4_N 143..>442 CDD:425404 34/199 (17%)
PTZ00121 <447..622 CDD:173412 39/183 (21%)
CD1_tandem_CHD5-9_like 638..703 CDD:349315 12/64 (19%)
CD2_tandem_CHD5-9_like 721..779 CDD:349310 14/62 (23%)
PLN03142 810..>1409 CDD:215601 180/802 (22%)
DEXHc_CHD8 811..1032 CDD:350818 66/271 (24%)
BRK 2317..2360 CDD:462196
BRK 2387..2426 CDD:470653
Blue background indicates that the domain is not in the aligned region.

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