DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment XNP and rad54l2

DIOPT Version :9

Sequence 1:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster
Sequence 2:XP_005174062.1 Gene:rad54l2 / 558947 ZFINID:ZDB-GENE-030131-3097 Length:1455 Species:Danio rerio


Alignment Length:1052 Identity:341/1052 - (32%)
Similarity:517/1052 - (49%) Gaps:222/1052 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 SEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEEEEERKSSG-DEEEAANSSDSEVMPQRKRRR 333
            ||||.:.|.......|:.|.|.:.      .:|||||:.::.| |||:|.:..:|..|..|:...
Zfish    20 SEEAISGSDLEPSLNSEEEEEEEE------MDEEEEEDGENDGDDEEDAGDQLESLEMEDRRDPS 78

  Fly   334 KKSESDKGSSDFEPEEKQKKKGR-KRIKKTSS-------------GESDGDGDDDKQKNK----- 379
            ..:.:...|.|..||...:...| ....:|||             ..:..:.:..|:.:|     
Zfish    79 SPAPTSPMSGDSSPERLSRPASRPSSTSRTSSRPGSQPPSSPDTRSNASANSNTKKKTSKTSKPA 143

  Fly   380 --RKHIRKIIKTKDLDLTTKEAAKEEDDRRKRIEDRQKLY------------------------- 417
              |::|||::....|:..||.|.:||.:||:|:|.::|.:                         
Zfish   144 HLRRNIRKLLTENQLEAGTKAAQQEELERRRRLEQQRKEFSLHADLATAAAGSKQEVICLDSSGD 208

  Fly   418 ----------------------------NRIFVKSESVEINELVLDFDEES----KKALLQVDK- 449
                                        :.:.:.||..|...|....:|.|    ..:|.|.|. 
Zfish   209 EGEEKEAPPPPLPDHRDDVIELSSGDEGDALRISSEEEEDRSLTPGTEESSGSHINDSLNQPDSQ 273

  Fly   450 --------------------GLLKKLKPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLG 494
                                .|.:.:||||:.|::|::|...|:|:..:...|.||||||.||||
Zfish   274 GRVLININHPAEEEDLFLAPQLARAVKPHQIGGIRFLYDNLVESLERYKTSSGFGCILAHSMGLG 338

  Fly   495 KTLQVVTLSHTLLVNTRRTGVDRVLIISPLSTVNNWAREFTSWMKFANR------------NDIE 547
            |||||::....||   |.||...||.|.|::|:.||..||..|:..|..            ...:
Zfish   339 KTLQVISFIDVLL---RHTGAKTVLAIVPVNTLQNWLAEFNLWLPAAEALPPDTDPQQVLPRTFK 400

  Fly   548 VYDIS-RYKDKPTRIFKLNEWFNEGGVCILGYDMYRILANEKA--KGLRKK-------------- 595
            |:.:: .:|....|...:.:|..:|||.::||:|||:|:.:|:  .|.::|              
Zfish   401 VHILNDEHKTTVARAKVVEDWTGDGGVLLMGYEMYRLLSLKKSFVTGRKRKSKKPAGPVIIDLDE 465

  Fly   596 --QREQLM----QALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREY 654
              ::::||    :||..||||:|:|||||.:||...|.|:|:..:|::||:||||.||||||.||
Zfish   466 EDRQQELMKAIERALSRPGPDVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNLIEY 530

  Fly   655 YCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVL 719
            :||:.||:|:.|||.:|:.|.|..||.|||..|||.:|::||::|||:||.||||.:|||.:.||
Zfish   531 WCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVQLMRYRSHVLHSLLEGFVQRRGHDVL 595

  Fly   720 APYLPPKHEYVVYTTLSELQQKLYGYYMTTHREQSGGDVVGKGARLFQDFQDLRRIWTHPMNLRV 784
            ...||||.|:|:...||.||:.||..:|...||  .|:....|....:.|....:||.||..|. 
Zfish   596 RHQLPPKEEHVILVRLSRLQRALYTEFMNRFRE--AGNSGWLGLNPLKAFCVCCKIWNHPDVLY- 657

  Fly   785 NSDNVIAKRLLSNDDSDMEGFICDETDEDEAASNSSDSCETFKSDASMSGLAASSGKVKKRKTRN 849
               ..:.|..|:|:         .:.|.|:..|:|...|       |..|:        |.||  
Zfish   658 ---EALQKENLANE---------QDLDLDDLNSSSGTRC-------SAPGI--------KSKT-- 693

  Fly   850 GNAGGGDSDSDLEMLGGLGGGSSVQKDDPS----EWWKPFVEERELNNVHHSPKLLILLRLLQQC 910
                 .|:.:..:|  .:|..:.:|:....    ||.|..:...:...:.:|.|:::|..|:.:.
Zfish   694 -----SDAANSRQM--SVGHLNPLQEKANQVITYEWAKEVMTNYQTGVLENSAKMVLLFYLIDET 751

  Fly   911 EAIGDKLLVFSQSLQSLDVIEHFLS------LVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGS 969
            .|.|||:|||||||.:|.|||.|||      ..::.|.|             |....:|:|||||
Zfish   752 VARGDKILVFSQSLSTLTVIEDFLSRRPMPIQTETGTHN-------------WVRNINYYRLDGS 803

  Fly   970 CSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRF 1034
            .|..:||.:..|||:..|.:|.:||:|||||.||:||:.|||||:||.||||.||.|::.||||:
Zfish   804 TSASERERLINQFNDPANTQAWVFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRY 868

  Fly  1035 GQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQISRHYNQTDLMELYSY--------E 1091
            ||.|||:||||:...|:|:|:|:|||:||..:.||:|:.....::.:.::..|..:        |
Zfish   869 GQRKPCHIYRLVCDFTLEKKIYDRQVSKQGMSDRVVDDLNPVLNFTRKEVESLLHFVEEEPDPAE 933

  Fly  1092 LKPSTEREMPILPKDRLFAEILTEHEKLIFKYHEHDSLLEQEEHENLTEEERKSAWAEYEAEKTR 1156
            |:|:.|.|..|.....::..:||:.     .:| |:|||...:...||:.|:::|...||.||..
Zfish   934 LQPNNEMETVIQQACVMYPHLLTKP-----PFH-HESLLMDRKEMKLTKAEKRAAKKSYEDEKRA 992

  Fly  1157 TV--QASQYMSY 1166
            :|  |...|..|
Zfish   993 SVPYQRPSYAHY 1004

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XNPNP_651398.1 DTHCT 258..335 CDD:285332 21/65 (32%)
SNF2_N 458..779 CDD:278600 145/355 (41%)
DEXDc 483..646 CDD:238005 73/197 (37%)
Helicase_C 913..1035 CDD:278689 63/127 (50%)
rad54l2XP_005174062.1 SNF2_N 302..656 CDD:278600 147/358 (41%)
DEXDc 328..520 CDD:238005 71/194 (37%)
Helicase_C 738..869 CDD:278689 68/143 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D111318at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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