DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment XNP and atrx

DIOPT Version :9

Sequence 1:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster
Sequence 2:XP_021336651.1 Gene:atrx / 323299 ZFINID:ZDB-GENE-030912-11 Length:2053 Species:Danio rerio


Alignment Length:1421 Identity:522/1421 - (36%)
Similarity:752/1421 - (52%) Gaps:255/1421 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KKNPNARHTDAATPLT----------TDDSNSSSVSRRESATESKSASESESSPPRSN------- 50
            |:..::|.|  |.|.|          :|||...|.:::.|| :.|...||:||...|:       
Zfish   694 KRRLSSRST--AKPKTKRKLEEGSSESDDSEKPSAAKKRSA-KKKKGKESDSSNHNSDLEKEIKK 755

  Fly    51 -------TKQSRTHKNVKASGKATV------------------------SSSSDSDQAVANSSAN 84
                   .|:|::.|..:..|...|                        |||||.::.....:.|
Zfish   756 LSKVDSGKKKSKSTKKDEDEGSKEVKKGPKRSFERKRRSQREKAKTKEESSSSDEEEEEEKQADN 820

  Fly    85 DEEKEPVCKIRIVPLEKLLASPKTKERPSRGS-QQKNVT--INDSSDEEPLKGSKLVLPARKSRN 146
            ..|.....||:.: ||.::||.....:.|... :.||..  :.|..|:...:.:|.:|.|:...|
Zfish   821 SGEDSDQQKIKPI-LESVIASIDGFHQSSGDEVELKNEASQVVDDDDDPENRIAKRMLLAQIKAN 884

  Fly   147 KNASIIELSDSEEVDEEEESLLVAIPLPKEAQQTKPEKNSSKASKESIEKRQKAQKEATTSSARA 211
            .::.....||.|..|:|            :...||.||:::|...||     .:.:|.|:.|...
Zfish   885 YSSGADSSSDDENADKE------------DGDSTKKEKDNAKKEDES-----DSDEETTSDSGSD 932

  Fly   212 IRSVNGTRRGSLSSERSSRASSSRAESPPRPKRCVVRLKRVSLPKTKPAQKPKKMSSDSEEAATT 276
            :....|.||..|..                        |::||.:.:         ||.|.|...
Zfish   933 VDLKKGGRRHRLLR------------------------KKLSLSEGE---------SDEENAVKN 964

  Fly   277 SKKSRQR-RSK--SESEADSDYEAPAAEEEEEEERKSSGDEEEAANSSDSEVMPQRKRRRKKSES 338
            .|::::| |.|  |:..||||:         :..|..|.|....:.:...:...::..:||...|
Zfish   965 KKETKKRGRRKVDSDDSADSDF---------KHSRSDSSDASALSEAVSEDEDDEKSTKRKTRSS 1020

  Fly   339 DKGSSDFEPEEKQKKKGRKRIK---KTSSGES------DGDGDDDKQKNKRKHIRKIIKTKDLDL 394
            .|.:.|.|...|::||.|:|||   .:|||:|      :||.||......||.||||||...|..
Zfish  1021 KKAAKDKERSYKKEKKKRRRIKVQESSSSGKSGEEEGEEGDEDDKGTPKGRKKIRKIIKDDKLRT 1085

  Fly   395 TTKEAAKEEDDRRKRIEDRQKLYNRIFVKSESVEINE-----------LVLDFDEESKKALLQVD 448
            .|::|.|||:||||||.:|::|..::   .|::|:.|           ||||.|||:|:.|:||.
Zfish  1086 ETRDALKEEEDRRKRIAERERLREKL---RETIEVKESSQVTCPITTKLVLDEDEETKEPLVQVH 1147

  Fly   449 KGLLKKLKPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLGKTLQVVTLSHTLLVNTRRT 513
            :.::.|||||||.||:||||.|.|::::.::..|||||||||||||||||||||.||:|: ..:.
Zfish  1148 RNMVTKLKPHQVDGVQFMWDCCCESVRKVEKSAGSGCILAHCMGLGKTLQVVTLLHTVLL-CEKL 1211

  Fly   514 GVDRVLIISPLSTVNNWAREFTSWMK-FANRNDIEVYDISRYKDKPTRIFKLNEWFNEGGVCILG 577
            .....|::.||:||.||..||..|.: ..:...:||.:::..|....|.:.|..|..:|||.|:|
Zfish  1212 NFSTALVVCPLNTVLNWLNEFEKWQEGLKDEESLEVTELATVKRPQERAYALQRWQEDGGVMIMG 1276

  Fly   578 YDMYRILANEKAKGLR-KKQREQLMQALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIV 641
            |:|||.|.  :.:.:: ||.:|...:.|||||||.|:|||||:||||.:::|||:..::|:||:|
Zfish  1277 YEMYRNLT--QGRNIKSKKLKETFQKTLVDPGPDFVICDEGHVLKNEASAVSKAMNSIKTRRRVV 1339

  Fly   642 LTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKL 706
            ||||||||||.||:||:.|:|.||||:.||:.|||:|||.|||..|||..|:|:||.|:|||:::
Zfish  1340 LTGTPLQNNLIEYHCMVNFIKENLLGSVKEFRNRFINPIQNGQCADSTLVDVRVMKKRAHILYEM 1404

  Fly   707 LEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTTHREQSGGDVVGK---GARLFQD 768
            |.||:|||||:.|..:||||||||:...||.:|.|||.||:............||   |.:||||
Zfish  1405 LAGCVQRRDYTALTKFLPPKHEYVLAVRLSPIQCKLYRYYLDHFTGVGSALESGKGRAGTKLFQD 1469

  Fly   769 FQDLRRIWTHPMNLRVNSDNVIAKRLLSNDDSDMEGFICDETDEDEAASNSSDSCETFKSDASMS 833
            ||.|.||||||..|::  |.:..:.....|:..||.||..||:|...:..|.|            
Zfish  1470 FQMLSRIWTHPWCLQL--DYISKENKGYFDEDSMEEFIASETEESSMSLTSED------------ 1520

  Fly   834 GLAASSGKVKKRKTRNGNAGGGDSDS-DLEML--------GGLGGGSS----VQKDDPS------ 879
                ...|.||::.|..:.....||| |||::        ||...|.:    |::..||      
Zfish  1521 ----EKPKRKKKRGRGKDQSSDKSDSDDLEVIKEWNTSSRGGNPEGRNRAEPVEEVRPSNSGPGS 1581

  Fly   880 ---EWWKPFVEERELNNVHHSPKLLILLRLLQQCEAIGDKLLVFSQSLQSLDVIEHFLSLVDSNT 941
               ||:|.||.|.:...:.||.|:::|..:|:..|.:.||:|||||||.|||:||.||.|.....
Zfish  1582 PSPEWYKEFVSEEDAEVLTHSGKMVLLFEILRLAEEVDDKVLVFSQSLISLDLIEDFLELAGRAK 1646

  Fly   942 KNYEFEGDVGDFK--GCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGI 1004
            :    ||....:|  |.|....||:|||||.:...|:...:.||:|:|:|.||||||||||.|||
Zfish  1647 E----EGKESPYKGEGKWFRNIDYYRLDGSTNALTRKKWAEDFNDISNVRGRLFLISTRAGSLGI 1707

  Fly  1005 NLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRV 1069
            ||||||||:|||.|||||:|.|||||||||||:|..|:||.:|.||||:|:|:||||||:.:.||
Zfish  1708 NLVAANRVIIFDASWNPSYDIQSIFRVYRFGQVKTVYVYRFLAQGTMEEKIYDRQVAKQSLSFRV 1772

  Fly  1070 IDEQQISRHYNQTDLMELYSYE-------LKPSTEREMPILPKDRLFAEILTEHEKLIFKYHEHD 1127
            :|:|||.||:...:|.|||::|       .:..::|..|:||||.:.||:|..::..|..|||||
Zfish  1773 VDQQQIERHFTMNELTELYTFEPDQLDDPSEKKSKRATPMLPKDPVLAELLHSYKDHIVCYHEHD 1837

  Fly  1128 SLLEQEEHENLTEEERKSAWAEYEAEKTRTVQASQYMSYDRNAFGNQVMGQFGNASGSVTSNKIF 1192
            |||:.:|.|.|:||:||:|||||||||     ....|.:::.::....||         ..|..|
Zfish  1838 SLLDHKEEEALSEEDRKAAWAEYEAEK-----KGLSMRFNQPSYSQMGMG---------APNSYF 1888

  Fly  1193 GFRSDILLQLLNMK----ISKDHQE-LNQNQVIQLVP-TYLQQLYNEMNNGDPTM---------- 1241
            .|....|..:.|.:    |::..|: |..:..::.|| ..|:.:..::...:|::          
Zfish  1889 PFNVAALASMSNQQLEDLINQGRQKVLEASSALKTVPREALEDIVAQVWKENPSLPEAQVHSMAL 1953

  Fly  1242 ----------------YKDLLNLHSNIVHPSGMYMNPLLYAN---QNPNAAGYNQG 1278
                            |:|:|:....::    ||:..:| ||   |....|...||
Zfish  1954 GRQAGFELEVKHREAIYRDVLSKQQTLM----MYVQKVL-ANRKVQEQQLAMARQG 2004

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XNPNP_651398.1 DTHCT 258..335 CDD:285332 17/79 (22%)
SNF2_N 458..779 CDD:278600 169/325 (52%)
DEXDc 483..646 CDD:238005 79/164 (48%)
Helicase_C 913..1035 CDD:278689 73/123 (59%)
atrxXP_021336651.1 ADDz_ATRX 158..261 CDD:277252
Neuromodulin_N <594..1151 CDD:331332 140/522 (27%)
SNF2_N 1157..1483 CDD:306645 171/328 (52%)
HELICc 1602..1746 CDD:238034 83/147 (56%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583566
Domainoid 1 1.000 317 1.000 Domainoid score I1236
eggNOG 1 0.900 - - E2759_KOG1015
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 781 1.000 Inparanoid score I504
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D111318at33208
OrthoFinder 1 1.000 - - FOG0003310
OrthoInspector 1 1.000 - - otm25642
orthoMCL 1 0.900 - - OOG6_104269
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4866
SonicParanoid 1 1.000 - - X2684
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.690

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