DRSC/TRiP Functional Genomics Resources

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Protein Alignment XNP and rad-54.B

DIOPT Version :10

Sequence 1:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster
Sequence 2:NP_001255913.1 Gene:rad-54.B / 190999 WormBaseID:WBGene00013792 Length:833 Species:Caenorhabditis elegans


Alignment Length:928 Identity:225/928 - (24%)
Similarity:362/928 - (39%) Gaps:310/928 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 KSESEADSDYEAPAAE----------------EEEEEERKSSGDEEEAANSSDSEV---MP---- 327
            |||.|.|....:.|.:                ..|.:||.::|..::..::...|:   ||    
 Worm    55 KSEDERDVICRSSALKGLDQLEDGRIINIGSWSVEIQERIATGPPQKPISAQKPEIQSPMPPMTP 119

  Fly   328 ---QRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIKKTSSGESDGDGDDDKQKNKRKHIRKIIKT 389
               :....||:..........|..:...|:....:......||...|.......:.|....|:..
 Worm   120 GNSENVENRKRGGFSSPFLGIELPKPLSKRSATFVPPLIGSESSSSGGSSSSTIQEKIPPFILNE 184

  Fly   390 KD-LDLTTKEAAKEEDDRRKRIEDRQKLYNRIFVKSESVEINELVLDFDEESKKALLQVDKGLLK 453
            :| ||..|..|                                             :.||....:
 Worm   185 QDILDRKTTSA---------------------------------------------VTVDTRFAR 204

  Fly   454 KLKPHQVAGVKFMWDACFETLKESQEK--PGSGCILAHCMGLGKTLQVVTLSHTLL--VNTRRTG 514
            .|:|||.:|::|:    |:.|:....|  .|.|.|||..|||||:||.:..:..||  ..|.:..
 Worm   205 HLRPHQKSGIQFI----FDRLRRGSGKNGGGGGAILADDMGLGKSLQTMAATWALLKGSKTAQQL 265

  Fly   515 VDRVLIISPLSTVNNWAREFTSW---MKFANRNDIEVYDISRYKDKPTRIFKLNEWFNEGGVCIL 576
            .:..|||.|.|.||||..||..|   |:|.....:...||:.|:.    ..||..:.      ::
 Worm   266 ANSCLIIVPSSLVNNWKAEFDKWWRLMRFPAVIALTANDITTYQS----TIKLMPYL------VI 320

  Fly   577 GYDMYRILAN---EKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKR 638
            .||    ||.   ||.|.:|.               |::||||||.|||....:.|.:..:...|
 Worm   321 SYD----LAQRHVEKLKIIRF---------------DVMVCDEGHKLKNLDGKLRKTLLSLEIPR 366

  Fly   639 RIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRSHIL 703
            |::|||||:||:..|:|.::.||:|::.|:..|:.                    ::...|...|
 Worm   367 RLILTGTPMQNDFEEFYSLLDFVRPSVFGSIVEFR--------------------KMCSDRPEQL 411

  Fly   704 HKLLEGCIQRRDYS-VLAPYLPPKHEYVVYTTLSELQQKLYGY---YMTTHREQSGGDVVGKGAR 764
            ::|::.|:.||..: |...:||.||||:::...|.:|:.::..   |||       ||.:   :.
 Worm   412 NELIDECMLRRTAADVDLKHLPEKHEYILFCAASPIQKHVHSEICDYMT-------GDAL---SL 466

  Fly   765 LFQDFQDLRRIWTHPMNLRVNSDNVIAKRLLSNDDSDMEGFICDETDEDEAASNSSDSCETFKSD 829
            :|    ..|::..||            |.||.|        :.::|::.:|..:|          
 Worm   467 IF----FARQLANHP------------KLLLDN--------LREKTEKSKAHKHS---------- 497

  Fly   830 ASMSGLAASSGKVKKRKTRNGNAGGGDSDSDLEMLGGLGGGSSVQKDDPSEWWKPFVEERELNNV 894
               ..|.|..|....|                       ||                       |
 Worm   498 ---PLLLAFDGAHMPR-----------------------GG-----------------------V 513

  Fly   895 HHSPKLLILL------RLLQQCEAIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDF 953
            ..|.||..|:      ||||:|      .::.|..:::||:|:.....:              :|
 Worm   514 KESGKLTALVDMIKCFRLLQEC------TVIVSNYIETLDMIQQLCEYL--------------NF 558

  Fly   954 KGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVS 1018
            |        ..||||...|..|:.:.:.||:..: .:.:||:||:|||:|:||:.|:|:|:||..
 Worm   559 K--------VLRLDGKTQVPDRQKLVRTFNDHRD-PSNIFLLSTKAGGVGLNLIGASRLVLFDSD 614

  Fly  1019 WNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQIS---RHYN 1080
            |||::|.|::.|::|.||::||:|||||..||:|:|:.:||:.|.... .|||..::.   ..:.
 Worm   615 WNPANDQQAMARIWRDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGLG-CVIDAIEVGDTIATFT 678

  Fly  1081 QTDLMELYSYELKPSTEREMPILPKDRLFAEILTEHEKLIFKYHEHD---------SLLEQEEHE 1136
            ..||.::::                   |....||       .:.||         .:||.|   
 Worm   679 DEDLKDIFT-------------------FTGSATE-------CNTHDLCECPCDGCGMLENE--- 714

  Fly  1137 NLTEEERKSAWAEYEAEK 1154
             :.||:......|.:|||
 Worm   715 -MDEEDDGDDVVENDAEK 731

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XNPNP_651398.1 PTZ00121 <173..>460 CDD:173412 32/200 (16%)
HepA <382..1071 CDD:440319 186/709 (26%)
DEXHc_ATRX 455..699 CDD:350826 78/253 (31%)
rad-54.BNP_001255913.1 HepA <206..661 CDD:440319 177/629 (28%)

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