DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment XNP and atrx

DIOPT Version :9

Sequence 1:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster
Sequence 2:XP_002931858.1 Gene:atrx / 100380046 XenbaseID:XB-GENE-980568 Length:2268 Species:Xenopus tropicalis


Alignment Length:1525 Identity:552/1525 - (36%)
Similarity:791/1525 - (51%) Gaps:305/1525 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KKNPNARHT------------------DAATPLTTDDSNSSSVSRRESATESKSASESES----- 44
            |:|..|:|:                  .|....:|.||:......:::|..|.|:||.:|     
 Frog   797 KRNSTAKHSPAESGESPKAKRSLAKKMQAQVNKSTSDSDEVPEVLKKAALMSNSSSELDSSNEAN 861

  Fly    45 SPPRSNTKQSRTHKNVKASGKATVSSSSD-SDQAVANSSANDEEKEPVCKIRIVPLEKLLASPKT 108
            |..|::.:|.:|.|......:::.||.|: :.:...||:|..:::..........|||.:.....
 Frog   862 SGKRTSNRQDKTAKGYSKRKRSSSSSGSEPAKRTTRNSTAAKKKRGDQSDTSNSELEKEVKKLGK 926

  Fly   109 KERPSRGSQQKNVTINDSSDEEPLKGSKLVLPARKSR-------NKNASIIELSD---------S 157
            |:...:|.:||:....::|:....|.......|:||:       ||..|..:||:         .
 Frog   927 KDSVRKGLKQKSKKKEENSESSDEKNQNRSQKAKKSKRVRTPASNKKESSSDLSEEEQENSHNSD 991

  Fly   158 EEVDEEEESLLV-----------------------AIPLPK-EAQQTKPEKNSSK---------- 188
            |:.||::...||                       |.|..: :.....||...:|          
 Frog   992 EDSDEQKIKPLVENEVVSATGFVQSSGDEAGTKCGAAPTEEDDDDDDDPENRIAKKMLLEEIKAN 1056

  Fly   189 ---------ASKESIEKRQKAQKEATTSSARAIRSVNGTRRGSLSSERSSRASSSRAESPPRPKR 244
                     :|.|..|:.:|:..::||.:..  :.||...:....|: |...|.|.:|..||.:.
 Frog  1057 LSSDDVEEASSDEEPEEGKKSVAKSTTKTED--KDVNEDDKSDSDSD-SDSDSDSESEKKPRYRH 1118

  Fly   245 CVVRLKRVSLPKTKPAQKPKKMSSDSEEAATTSK--KSRQRRSKSESEADSDYEAPAAEEEEEEE 307
            .::| :::||......::.:|     ::.|..||  |.|.||..|..|:.||:            
 Frog  1119 HLLR-RKISLSDGDSGEEKEK-----KDKAKNSKNGKRRNRRKVSSEESASDF------------ 1165

  Fly   308 RKSSGDEEEAANSSDSEVMPQRKRRRKKSESDKGSSDFEPEEKQKKKGRKRIK--------KTSS 364
            .||||..||.:.|.||:....|.|..|| |:::....:    ||||| |:|||        |::.
 Frog  1166 HKSSGVSEEISESDDSDDQRPRTRAAKK-EAEENQRSY----KQKKK-RRRIKVQDDSSDSKSNK 1224

  Fly   365 GES-DGDGDDDKQKNK----RKHIRKIIKTKDLDLTTKEAAKEEDDRRKRIEDRQ----KLYNRI 420
            |.| |||.|:|.....    ||.||||||...|...|:.|.|||::|||||.:|:    ||....
 Frog  1225 GNSEDGDHDEDSDSKSPGKGRKKIRKIIKDDKLRTETQNALKEEEERRKRIAERERERDKLRELQ 1289

  Fly   421 FVKSESVE------INELVLDFDEESKKALLQVDKGLLKKLKPHQVAGVKFMWDACFETLKESQE 479
            .|.:|.|.      ..:||||.:||:|:||:||.:.::.|||||||.||:||||.|.|::|::::
 Frog  1290 VVDTEDVSPVKCPVTTKLVLDENEETKEALVQVHQKMVTKLKPHQVDGVQFMWDCCCESMKKTKK 1354

  Fly   480 KPGSGCILAHCMGLGKTLQVVTLSHTLLVNTRRTGVDRVLIISPLSTVNNWAREFTSWMK-FANR 543
            .|||||||||||||||||||||..||:|: :.:......|::.||:||.||..||..|.. ..:.
 Frog  1355 DPGSGCILAHCMGLGKTLQVVTFLHTVLL-SEKLDFSTALVVCPLNTVLNWLNEFEKWQDGMDDE 1418

  Fly   544 NDIEVYDISRYKDKPTRIFKLNEWFNEGGVCILGYDMYRILA---NEKAKGLRKKQREQLMQALV 605
            ..:||.:::..|....|.:.:..|..|||:.|:||:|||.|.   |.|:    ||.:|...:.||
 Frog  1419 EKLEVCELATVKRPQERSYMMQRWHQEGGILIIGYEMYRNLTQGRNVKS----KKLKEIFHKTLV 1479

  Fly   606 DPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYK 670
            |||||.|:|||||:||||.::||||:..::|:|||:||||||||||.||:||:.|:|.||||:.|
 Frog  1480 DPGPDFVICDEGHILKNELSAISKAMNSIKTRRRIILTGTPLQNNLVEYHCMVNFIKENLLGSIK 1544

  Fly   671 EYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTL 735
            |:.|||:|||.|||..|||..|:|:||.|:|||:::|.||:|||||:.|..:||||||||:...:
 Frog  1545 EFRNRFINPIQNGQCADSTLVDVRVMKKRAHILYEMLAGCVQRRDYTALTKFLPPKHEYVLSVRI 1609

  Fly   736 SELQQKLYGYYMTTHREQSG-GDVVGK-GARLFQDFQDLRRIWTHPMNLRVNSDNVIAKRLLSND 798
            |.||.|||.||:.......| |.|.|| |.:||||||.|.||||||..|:::..:...|.....|
 Frog  1610 SPLQCKLYQYYLDHLTGAVGEGGVRGKSGTKLFQDFQVLSRIWTHPWCLQLDYISKENKGYFDED 1674

  Fly   799 DSDMEGFICDETDEDEAASNSSDSCETFKSDASMSGLAASSGKVKKRKTRNGNAGGGDSDSDLEM 863
            || ||.||         ||:|.:|..:..|:..:.....:.||.|    |..::...:||:|:|:
 Frog  1675 DS-MEEFI---------ASDSEESSMSLSSEEEVVNKKKAKGKGK----RENSSSEEESDNDVEV 1725

  Fly   864 L--------GGLG----------------------GGSSVQKDDPSEWWKPFVEERELNNVHHSP 898
            :        ||.|                      ..||......::|:|.||.|.:.:.:.||.
 Frog  1726 IKVWNSRSRGGKGKDLNDEEASNSPVVPKAEETKATSSSTPGSPAADWYKDFVTEADSSIMEHSG 1790

  Fly   899 KLLILLRLLQQCEAIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYE--------FEGDVGDFKG 955
            |:::|..:|:..|.:|||:|||||||.|||:||.||.|. |..||.|        ::||     |
 Frog  1791 KIMLLFEILRMAEVLGDKVLVFSQSLISLDLIEDFLELA-STEKNEENASEKPVFYKGD-----G 1849

  Fly   956 CWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWN 1020
            .|....||:||||..|.:.|:...::||:.||:|.|||||||:||.|||||||||||:|||.|||
 Frog  1850 KWFRNIDYYRLDGQTSPQTRKKWAEEFNDSTNIRGRLFLISTKAGSLGINLVAANRVIIFDASWN 1914

  Fly  1021 PSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQISRHYNQTDLM 1085
            ||:|.||||||||||||||.::||.:|.||||:|:|:||:|||:.:.||||:|||.||:...:|.
 Frog  1915 PSYDIQSIFRVYRFGQIKPVFVYRFLAQGTMEEKIYDRQIAKQSLSFRVIDQQQIERHFTMNELT 1979

  Fly  1086 ELYSYEL----KPSTE----REMPILPKDRLFAEILTEHEKLIFKYHEHDSLLEQEEHENLTEEE 1142
            |||::|.    .|::|    ||.|:||||.:.||:|...::.|..||||||||:.:|.|.||||:
 Frog  1980 ELYTFEPDLLDDPNSEKKKKRETPMLPKDTVLAELLQILKEYIVTYHEHDSLLDHKEEEALTEED 2044

  Fly  1143 RKSAWAEYEAEK--------TRTVQASQYMSYDRN--------------AFGNQVMGQFGN---- 1181
            ||:|||||||||        ...|..:.|...:.|              :..||.:....|    
 Frog  2045 RKAAWAEYEAEKKGLTNRFNVAAVTGANYAQVNINSQSSYMPLNLGALSSLSNQQLEDLINQGRE 2109

  Fly  1182 ----ASGSVTSNKIFGFRSDIL------------LQLLNMKISK-DHQEL--------------N 1215
                |:.::.:.:|... .||:            .|:.::.:|: ..|||              .
 Frog  2110 KVVEATNNIATARIQPL-EDIISTVWKENPTATEAQVQSLALSRQSSQELEIKRREAIYNDVLTK 2173

  Fly  1216 QNQVIQ-----LVPTYLQQLYNEMNNGDPTMYK-----DLLNLHSN---IVHPS--------GMY 1259
            |..:|.     |:...||..||:.......:::     :.|.:..|   |:.||        |||
 Frog  2174 QQMLISCVQRILMSRRLQHQYNQQQQQQQIVFQQQAALNRLMMQKNPNIIISPSNFSQIDMRGMY 2238

  Fly  1260 M-----------NPLLYANQNPNAAGYNQG 1278
            .           .|.....:||   |.:||
 Frog  2239 QAGMQGHQMQRNAPASIRAKNP---GPSQG 2265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XNPNP_651398.1 DTHCT 258..335 CDD:285332 23/78 (29%)
SNF2_N 458..779 CDD:278600 175/326 (54%)
DEXDc 483..646 CDD:238005 80/166 (48%)
Helicase_C 913..1035 CDD:278689 76/129 (59%)
atrxXP_002931858.1 ADDz_ATRX 166..269 CDD:277252
PTZ00121 <298..1088 CDD:173412 58/292 (20%)
HepA <1213..1969 CDD:223627 364/780 (47%)
DEXHc_ATRX 1330..1573 CDD:350826 132/247 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 319 1.000 Domainoid score I1250
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 786 1.000 Inparanoid score I510
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D111318at33208
OrthoFinder 1 1.000 - - FOG0003310
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2684
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.970

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