DRSC/TRiP Functional Genomics Resources

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Protein Alignment alrm and AT4G28380

DIOPT Version :9

Sequence 1:NP_651393.1 Gene:alrm / 43074 FlyBaseID:FBgn0039332 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_194567.1 Gene:AT4G28380 / 828954 AraportID:AT4G28380 Length:391 Species:Arabidopsis thaliana


Alignment Length:277 Identity:68/277 - (24%)
Similarity:102/277 - (36%) Gaps:82/277 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 IPKNIFLGADNLATLHLQGNQLKQLGNHSFHALKEVKELSLAENQLEQISLGVFSGM------RK 186
            :|:.|.|.:| ||.:||..|:...:...||..|..:.||.|:.|:.    :|.|..:      .|
plant   106 LPEAIGLLSD-LALIHLNSNRFCGILPRSFANLSLLYELDLSNNRF----VGPFPDVVLALPSLK 165

  Fly   187 LMDL-----------NLAGNRLDALPRGVFDRNLNLTKLNLARNRFTAFESELLKLQPVFTQLDI 240
            .:||           .|..|.|||    :|..|..||.| :.|: ||...:.::    ||...|.
plant   166 YLDLRYNEFEGPLPPKLFSNPLDA----IFVNNNRLTSL-IPRD-FTGTTASVV----VFANNDF 220

  Fly   241 SGNIFQELTLNFTMLDVAIAHSCDLRRLTVYGVIHELDLHNNSLREM--PHIPLAANVSSLDLSH 303
            ||           .|...||...|        .:.||.|.|:||...  |.:.....:..||:|:
plant   221 SG-----------CLPPTIARFAD--------TLEELLLINSSLSGCLPPEVGYLYKLRVLDMSY 266

  Fly   304 NPLGNLQGNPLRRFTSLLRLNLSATGAHELPEGLFKKQSHLQMLDISGN---SIYSLKITIFDSL 365
            |.|           ...:..:|:..|             ||:.|::..|   ....|.:.:..||
plant   267 NSL-----------VGPVPYSLAGLG-------------HLEQLNLEHNMFTGTVPLGVCVLPSL 307

  Fly   366 --KALQYFYFQQNNWNC 380
              ..:.|.||.:....|
plant   308 LNVTVSYNYFSEEEGIC 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alrmNP_651393.1 LRR_RI 84..354 CDD:238064 61/247 (25%)
LRR_8 91..149 CDD:290566 9/20 (45%)
leucine-rich repeat 91..114 CDD:275380
leucine-rich repeat 115..138 CDD:275380 3/9 (33%)
LRR_8 138..197 CDD:290566 19/75 (25%)
leucine-rich repeat 139..162 CDD:275380 8/22 (36%)
leucine-rich repeat 163..186 CDD:275380 6/28 (21%)
LRR_8 185..243 CDD:290566 20/68 (29%)
leucine-rich repeat 187..210 CDD:275380 9/33 (27%)
leucine-rich repeat 211..283 CDD:275380 19/71 (27%)
leucine-rich repeat 284..319 CDD:275380 7/36 (19%)
LRR_8 318..377 CDD:290566 12/63 (19%)
leucine-rich repeat 320..343 CDD:275380 2/22 (9%)
leucine-rich repeat 344..365 CDD:275380 4/23 (17%)
AT4G28380NP_194567.1 PLN00113 59..>327 CDD:215061 68/277 (25%)
leucine-rich repeat 96..115 CDD:275380 3/8 (38%)
leucine-rich repeat 116..139 CDD:275380 8/22 (36%)
leucine-rich repeat 140..163 CDD:275380 6/26 (23%)
leucine-rich repeat 164..180 CDD:275380 3/15 (20%)
leucine-rich repeat 187..210 CDD:275380 11/28 (39%)
leucine-rich repeat 211..230 CDD:275380 7/33 (21%)
leucine-rich repeat 235..258 CDD:275380 7/22 (32%)
leucine-rich repeat 259..282 CDD:275380 7/46 (15%)
leucine-rich repeat 283..306 CDD:275380 4/22 (18%)
leucine-rich repeat 307..329 CDD:275380 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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