DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alrm and CG4950

DIOPT Version :9

Sequence 1:NP_651393.1 Gene:alrm / 43074 FlyBaseID:FBgn0039332 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001261934.1 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster


Alignment Length:528 Identity:133/528 - (25%)
Similarity:225/528 - (42%) Gaps:87/528 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LLSLQVVLILPPSYHLATPSSGSGQLRRLWLQDHCSAG-------IC--TNVVIGRSDYVILSQA 62
            :|.:.|:|||..|     ...|||....|...::.|.|       .|  |...:..|..|::...
  Fly     7 ILEVIVILILAIS-----SCDGSGGDIPLRCDEYDSMGYMDVNEAFCTVTGFTVTHSQNVVIKNI 66

  Fly    63 PIGG-TTMLTFLNSSIAKIPHLLFDTFPDLQVLRMENCSLETFEKPQFEGASNLMSLFLGYNRLK 126
            |.|. ...:.|..|::..:|..||:|||.|:.|.:.|.::....:..|..||||..|.|.||.|.
  Fly    67 PPGNMVKFMKFYESTLLYMPFHLFETFPYLKTLDVSNTNILELTRNAFSAASNLTYLNLAYNNLT 131

  Fly   127 DIPKNIFLGAD------------------------NLATLHLQGNQLKQLGNHSFHALKEVKELS 167
            .|..::|:||:                        .::.::|.||.||:|.|..|...:.::::|
  Fly   132 SIQTSVFIGANVLMRLDLSYNEISSLSVNAFCGLHTISQIYLTGNLLKELHNDIFKDNEYLEKVS 196

  Fly   168 LAENQLEQISLGVFSGMRKLMDLNLAGNRLDALPRGVFDRNLNLTKLNLARNRFTAFESELLKLQ 232
            ...|.|..|...||..||::.::||:.|||..:....|....:|..|.|:.|....|:   |..:
  Fly   197 FEGNLLTSIQPEVFRNMRRIKEVNLSNNRLIFIHPDTFADAASLENLVLSYNELKNFQ---LTEK 258

  Fly   233 PVFTQLDISGNIFQELTLNFTMLDVAIAHSCDLRRLTVYGVIH--ELDLHNNSLREMPHIPLAAN 295
            .:..||.:..|....||:|.|.. |..:|: .:..|.::..:|  .|||..|.|..:.:|....:
  Fly   259 NIVHQLHLDNNYLTNLTINATRF-VRASHN-QISELFLHQSLHIETLDLSANKLSSISNITNITH 321

  Fly   296 VSSLDLSHNPLGNLQGNPLRRFTSLLRLNLSATGAHELPEGLFKKQSHLQMLDISGNSIYSLKIT 360
            :..||:|.||:|.|..:...:...|..|||..||..||..|:|.||.:|:.||:|.|::..|.:.
  Fly   322 MLYLDVSDNPIGPLNISTFSQLKRLRGLNLRGTGIRELKFGMFSKQKYLEELDLSFNNLTILNLD 386

  Fly   361 IF---------------------------DSLKALQYFYFQQNNWNCDFLQ--LLMSSFVKRKDI 396
            :|                           ::...||.....:|.:||.:|.  |:..|..:...:
  Fly   387 MFVPYLTNLKKFLIDGNGLTELQGNRTFSEAFPQLQKLGVSRNRFNCSYLHHLLIPPSLPESVVL 451

  Fly   397 SFMEDITAPELVDDYVDGIACWYESDK--------QSKKCESGGSDAAMELSVVRNEIKTFTELV 453
            :...|....|  ..::..::|..:|.:        :..|.||.....:.:|.:|.:..|...  :
  Fly   452 NIEPDTNLDE--TPHIRDVSCISQSQEVVNASFTAEESKLESQIQMLSKQLDIVGSHSKNLE--L 512

  Fly   454 EKKFVKVY 461
            ...|::::
  Fly   513 HLAFMQIF 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alrmNP_651393.1 LRR_RI 84..354 CDD:238064 91/295 (31%)
LRR_8 91..149 CDD:290566 20/81 (25%)
leucine-rich repeat 91..114 CDD:275380 5/22 (23%)
leucine-rich repeat 115..138 CDD:275380 10/46 (22%)
LRR_8 138..197 CDD:290566 19/58 (33%)
leucine-rich repeat 139..162 CDD:275380 8/22 (36%)
leucine-rich repeat 163..186 CDD:275380 7/22 (32%)
LRR_8 185..243 CDD:290566 15/57 (26%)
leucine-rich repeat 187..210 CDD:275380 6/22 (27%)
leucine-rich repeat 211..283 CDD:275380 20/73 (27%)
leucine-rich repeat 284..319 CDD:275380 9/34 (26%)
LRR_8 318..377 CDD:290566 21/85 (25%)
leucine-rich repeat 320..343 CDD:275380 12/22 (55%)
leucine-rich repeat 344..365 CDD:275380 7/47 (15%)
CG4950NP_001261934.1 leucine-rich repeat 96..119 CDD:275380 5/22 (23%)
LRR_8 118..178 CDD:290566 15/59 (25%)
leucine-rich repeat 120..143 CDD:275380 10/22 (45%)
leucine-rich repeat 144..167 CDD:275380 0/22 (0%)
leucine-rich repeat 168..191 CDD:275380 8/22 (36%)
LRR_8 192..250 CDD:290566 18/57 (32%)
leucine-rich repeat 192..215 CDD:275380 7/22 (32%)
LRR_RI <207..432 CDD:238064 62/229 (27%)
leucine-rich repeat 216..239 CDD:275380 6/22 (27%)
leucine-rich repeat 240..299 CDD:275380 16/63 (25%)
LRR_8 299..356 CDD:290566 19/56 (34%)
leucine-rich repeat 300..321 CDD:275380 6/20 (30%)
leucine-rich repeat 322..345 CDD:275380 7/22 (32%)
LRR_8 344..405 CDD:290566 19/60 (32%)
leucine-rich repeat 346..365 CDD:275380 9/18 (50%)
leucine-rich repeat 370..394 CDD:275380 7/23 (30%)
leucine-rich repeat 395..420 CDD:275380 0/24 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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