DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alrm and pan-1

DIOPT Version :9

Sequence 1:NP_651393.1 Gene:alrm / 43074 FlyBaseID:FBgn0039332 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_497925.1 Gene:pan-1 / 175596 WormBaseID:WBGene00003915 Length:594 Species:Caenorhabditis elegans


Alignment Length:429 Identity:107/429 - (24%)
Similarity:179/429 - (41%) Gaps:80/429 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 APIGGTTM--LTFLNSSIAKIPHLLFDTFPDLQVLRMENCSLETFEKPQFE---GASNLMSLFLG 121
            |.:.||.:  ||..:|::..:|..||:.....|| ::|.|.|.|.:...|:   |::.|:|  |.
 Worm    74 ASLNGTELGRLTIRDSTVNVLPQDLFENVFAKQV-KLERCGLSTLQPNSFQSLGGSAELLS--LR 135

  Fly   122 YNRLKDIPKNIFLGADNLATLHLQGNQLKQLGNHSFHALKEVKELSLAENQLEQISLGVFSGMRK 186
            .||:|.:.|.:|.|..:|.||.|..|:::::...:|..||:|:||.|.||.:..:..|.|.||:.
 Worm   136 ENRIKKLEKGLFTGLKSLKTLDLAMNKIQEIDVGAFEELKKVEELLLNENDIRVLKTGTFDGMKN 200

  Fly   187 LMDLNLAGNRLDALPRGVFDRNLN-LTKLNLARNRFTAFESELLKLQPVFTQLDISGN------- 243
            |..|.|....|:.:.:|.| |.|| |.:|.|:.|.....:..:.........||:..|       
 Worm   201 LKKLTLQNCNLEIIQKGAF-RGLNSLEQLILSNNNLENIDWTIFSALKNLRVLDLGSNKISNVEM 264

  Fly   244 ----IFQELTLNFTMLD--------------VAI--------AHSCDLRRLTVYGVIHELDLHNN 282
                ..::|.||...:|              ||:        ....|:..||....|..|.|..|
 Worm   265 KSFPKLEKLVLNNNTIDSMKSIKLKDLPSLVVALFDRNKIESIGDMDMFGLTRSDRIETLSLARN 329

  Fly   283 SLREM-----PHIPLAANVSSLDLSHNPLGNLQGNP--------LRRFTSLLRL-----NLSATG 329
            :|.::     .|.|   |:.:|.|.:|.:..|..:.        |.....|:.|     |||...
 Worm   330 NLSQISPKAFQHTP---NLITLLLQYNQIEELSSHSPSQVRTPFLASLKKLVTLQLSSNNLSVIR 391

  Fly   330 AHELPEGLFKKQSHLQMLDISGNSIYSLKITIFDSLKALQYFYFQQNNWNCDFLQLLMSSF---- 390
            :.|||:.       |..|.:..|.|..::....:.:: ::..|...|..|. ..|....||    
 Worm   392 SDELPKS-------LSSLALDHNVISKIEARALEGME-IKRLYLHSNKLNY-LYQGTFDSFSPKS 447

  Fly   391 VKRKDISFMEDITAPELVDDYVDGIACWYESDKQSKKCE 429
            |:..|:|....:.   :.:|..:.:..|.|:.:::...|
 Worm   448 VEAVDVSLNPWVC---VCNDPKEWLPRWLEASEEADVAE 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alrmNP_651393.1 LRR_RI 84..354 CDD:238064 86/324 (27%)
LRR_8 91..149 CDD:290566 22/60 (37%)
leucine-rich repeat 91..114 CDD:275380 8/25 (32%)
leucine-rich repeat 115..138 CDD:275380 9/22 (41%)
LRR_8 138..197 CDD:290566 21/58 (36%)
leucine-rich repeat 139..162 CDD:275380 7/22 (32%)
leucine-rich repeat 163..186 CDD:275380 10/22 (45%)
LRR_8 185..243 CDD:290566 15/58 (26%)
leucine-rich repeat 187..210 CDD:275380 7/22 (32%)
leucine-rich repeat 211..283 CDD:275380 19/104 (18%)
leucine-rich repeat 284..319 CDD:275380 9/47 (19%)
LRR_8 318..377 CDD:290566 13/63 (21%)
leucine-rich repeat 320..343 CDD:275380 8/27 (30%)
leucine-rich repeat 344..365 CDD:275380 4/20 (20%)
pan-1NP_497925.1 leucine-rich repeat 130..152 CDD:275380 9/23 (39%)
LRR_8 132..187 CDD:290566 22/56 (39%)
leucine-rich repeat 153..176 CDD:275380 7/22 (32%)
leucine-rich repeat 177..200 CDD:275380 10/22 (45%)
LRR_8 199..259 CDD:290566 16/60 (27%)
leucine-rich repeat 201..224 CDD:275380 8/23 (35%)
LRR_RI 224..434 CDD:238064 43/220 (20%)
leucine-rich repeat 225..248 CDD:275380 4/22 (18%)
leucine-rich repeat 249..269 CDD:275380 3/19 (16%)
LRR_8 268..355 CDD:290566 20/89 (22%)
leucine-rich repeat 270..293 CDD:275380 4/22 (18%)
leucine-rich repeat 294..320 CDD:275380 5/25 (20%)
LRR_8 320..387 CDD:290566 15/69 (22%)
leucine-rich repeat 321..344 CDD:275380 7/25 (28%)
LRR_8 375..432 CDD:290566 14/64 (22%)
leucine-rich repeat 377..398 CDD:275380 8/20 (40%)
leucine-rich repeat 399..420 CDD:275380 4/20 (20%)
leucine-rich repeat 423..442 CDD:275380 4/19 (21%)
LRR_RI 80..326 CDD:238064 68/249 (27%)
leucine-rich repeat 81..104 CDD:275380 6/22 (27%)
leucine-rich repeat 105..128 CDD:275380 7/23 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.