DRSC/TRiP Functional Genomics Resources

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Protein Alignment alrm and lron-15

DIOPT Version :10

Sequence 1:NP_651393.1 Gene:alrm / 43074 FlyBaseID:FBgn0039332 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_495322.3 Gene:lron-15 / 174079 WormBaseID:WBGene00016974 Length:1275 Species:Caenorhabditis elegans


Alignment Length:604 Identity:123/604 - (20%)
Similarity:220/604 - (36%) Gaps:184/604 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 QVVLILPPSYHLATPSSGSGQLRRLWLQDHCSAGICTNVVIGRSDYVILSQAPIGGTTMLTFLNS 75
            :::.:..|:..|:.....:..:|||.|     ||   |.:...|||:|....|     :||:::.
 Worm   442 KIMSLKKPTSLLSITKEETSTVRRLNL-----AG---NRINNMSDYLIFEHMP-----LLTYVDV 493

  Fly    76 SIAKIPHL---LFDTFPDLQVLRMENCSLETF--------------EKPQFEGASN--------L 115
            |..:|..:   :|:...:|:.|.::|..|..|              :..|.:...|        |
 Worm   494 SFNRIRFISPRVFEKLKNLESLFLQNNQLAHFPSLFRLDKLRHLMLDNNQIQKIDNFSLADLPKL 558

  Fly   116 MSLFLGYNRLKDIPKNIF--LGADNLATLHLQGNQLKQLGNHSFHALKEVKELSLAENQLEQISL 178
            ..|.|..|:|..|.:|:|  ..:..|.:|:|..|::..:.:.||..|..:::|.|:.|.:..|:.
 Worm   559 QHLSLAGNQLDIITENMFGSSSSSELKSLNLAHNKIHSISSRSFSDLDNLQQLRLSHNNIRTITS 623

  Fly   179 GVFSGMRKLMDLNLAGNR-LDALPRGVFD-----------RNLN------------LTKLNLARN 219
            ..||.:|.|..|:|:.|| :..||..::.           .|||            |..|.|:.|
 Worm   624 MTFSNLRNLRYLDLSHNRIIKILPSALYQLPALDVLHLDHNNLNEIDRDAFRSFSDLQSLKLSHN 688

  Fly   220 RFTAFESELLKLQPVFTQLDISGNIFQELTL-----------------------------NFTML 255
            .|..|..|.|.......|||:|.|...|:.:                             ..|.:
 Worm   689 AFRRFSCEFLGSISQVHQLDLSSNQINEIDIFCIARGIRKLSLASNSVEKINRKLLQDATELTSI 753

  Fly   256 DVAIAHS----------CDLRRLT---------------------------------------VY 271
            |  |:|:          |:.|:|:                                       .:
 Worm   754 D--ISHNGIIDVDSDAFCECRKLSHIKLSHNYIRNLWKGTFQYQESLHTLDISFNDILFLHQGTF 816

  Fly   272 GVIHELDLH--NNSLREMPHIPLAANVSS---LDLSHNPLGNLQGNPLRRFTSLLRLNLSATGAH 331
            |..:.|.||  ||.|..:|...|::.::|   |||:||.:..:..:.|..|.:|..|:.:.....
 Worm   817 GKNNILQLHVNNNKLSRIPLEALSSTMASLHLLDLAHNNIKIVDSSQLTSFGNLSILSFANNKVD 881

  Fly   332 ELPEGLFKKQSHLQMLDISGNSIYSLKITIFD-----------------SLKALQYFYFQQNNWN 379
            .:.:|.|:....|::||:|.|.:.|...|.|.                 |:....:...|..|.:
 Worm   882 SIEDGAFENLLSLKILDLSNNPVTSWSPTAFRDLSHSISSINMANTGLFSMPKFSHRSIQSLNIS 946

  Fly   380 CDFLQLLMSSFVKRKDISFMEDITAPELVDDYVDGIACWYESDKQSKKCESGGSDAAMELSVVRN 444
            |:.:..|     ..||::.:..:.|.::             |....|:..|...:..:.|..:..
 Worm   947 CNKIYEL-----SEKDLAPLTKVVALDI-------------SHNNLKQISSMAFEPLIHLKQLNV 993

  Fly   445 EIKTFTELVEKKFVKVYRM 463
            .....|.|..:...::|::
 Worm   994 SANPITHLTNEHIQQLYKL 1012

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alrmNP_651393.1 leucine-rich repeat 91..114 CDD:275380 6/36 (17%)
LRR <100..426 CDD:443914 95/473 (20%)
leucine-rich repeat 115..138 CDD:275380 8/24 (33%)
leucine-rich repeat 139..162 CDD:275380 7/22 (32%)
leucine-rich repeat 163..186 CDD:275380 6/22 (27%)
leucine-rich repeat 187..210 CDD:275380 8/34 (24%)
leucine-rich repeat 211..283 CDD:275380 26/151 (17%)
leucine-rich repeat 284..319 CDD:275380 11/37 (30%)
leucine-rich repeat 320..343 CDD:275380 4/22 (18%)
leucine-rich repeat 344..365 CDD:275380 8/37 (22%)
lron-15NP_495322.3 PLN00113 120..>648 CDD:215061 54/218 (25%)
leucine-rich repeat 120..144 CDD:275380
leucine-rich repeat 145..168 CDD:275380
leucine-rich repeat 169..194 CDD:275380
leucine-rich repeat 195..217 CDD:275380
leucine-rich repeat 218..239 CDD:275380
leucine-rich repeat 240..263 CDD:275380
leucine-rich repeat 264..311 CDD:275380
leucine-rich repeat 312..335 CDD:275380
leucine-rich repeat 336..356 CDD:275380
leucine-rich repeat 361..383 CDD:275380
leucine-rich repeat 384..405 CDD:275380
leucine-rich repeat 409..432 CDD:275380
LRR 415..840 CDD:443914 87/412 (21%)
leucine-rich repeat 433..462 CDD:275380 2/19 (11%)
leucine-rich repeat 463..487 CDD:275380 12/36 (33%)
leucine-rich repeat 488..511 CDD:275380 5/22 (23%)
leucine-rich repeat 512..533 CDD:275380 5/20 (25%)
leucine-rich repeat 534..557 CDD:275380 2/22 (9%)
leucine-rich repeat 558..581 CDD:275380 8/22 (36%)
leucine-rich repeat 584..607 CDD:275380 7/22 (32%)
leucine-rich repeat 608..631 CDD:275380 6/22 (27%)
leucine-rich repeat 632..655 CDD:275380 7/22 (32%)
leucine-rich repeat 656..676 CDD:275380 3/19 (16%)
leucine-rich repeat 680..703 CDD:275380 8/22 (36%)
leucine-rich repeat 704..749 CDD:275380 6/44 (14%)
leucine-rich repeat 726..739 CDD:275378 0/12 (0%)
leucine-rich repeat 750..771 CDD:275380 5/22 (23%)
leucine-rich repeat 774..797 CDD:275380 1/22 (5%)
LRR <791..1089 CDD:443914 44/240 (18%)
leucine-rich repeat 798..845 CDD:275380 9/46 (20%)
leucine-rich repeat 846..869 CDD:275380 7/22 (32%)
leucine-rich repeat 870..893 CDD:275380 4/22 (18%)
leucine-rich repeat 894..915 CDD:275380 8/20 (40%)
leucine-rich repeat 940..963 CDD:275380 6/27 (22%)
leucine-rich repeat 964..987 CDD:275380 4/35 (11%)
leucine-rich repeat 988..1009 CDD:275380 3/20 (15%)
leucine-rich repeat 1038..1064 CDD:275380
leucine-rich repeat 1113..1139 CDD:275380
Blue background indicates that the domain is not in the aligned region.

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