DRSC/TRiP Functional Genomics Resources

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Protein Alignment alrm and Lrriq4

DIOPT Version :10

Sequence 1:NP_651393.1 Gene:alrm / 43074 FlyBaseID:FBgn0039332 Length:471 Species:Drosophila melanogaster
Sequence 2:XP_038959535.1 Gene:Lrriq4 / 100363341 RGDID:2323202 Length:621 Species:Rattus norvegicus


Alignment Length:507 Identity:125/507 - (24%)
Similarity:191/507 - (37%) Gaps:146/507 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LQVVLILP--PSYHLA-TPSSGSGQLRRLWLQDHCSAGICTNVVIGRSDYVILSQAPIGGTTMLT 71
            |::.|:||  |.:.:. |..|.:.:|.|   |:|                  |:|||....    
  Rat    41 LELTLVLPRLPEFEIIDTFKSLTKELLR---QEH------------------LTQAPQRND---- 80

  Fly    72 FLNSSIAKIPHLLFD-TFPDLQVLRMENCSLETFEKPQFEGASNLMSLFLGYNRLKDIPKNIFLG 135
                     ||.:.| ||    .:...|.:|:|. .|:......|..:.|..|::.:||:.| ..
  Rat    81 ---------PHRVTDRTF----FIDGSNQNLKTI-PPEILALKELEEVHLENNQISEIPQGI-QH 130

  Fly   136 ADNLATLHLQGNQLKQLGNHSFHALKEVKELSLAENQLEQISLGVFSGMRKLMDLNLAGNRLDAL 200
            .:.:..|:|..|.|:.| .....:|..::.|.|:.|.|...||.|...:|.|.:|.|....|..:
  Rat   131 LEKIKVLYLHNNSLQNL-CQELGSLSNLESLDLSGNLLVLSSLQVICRLRTLRELRLYNTGLTEV 194

  Fly   201 PRGVFDRNLNLTKLNLARNRFTAFESELL---KLQPVFTQLDISGNIFQELTLNFTMLDVAIAHS 262
            |.|:.....:|..|.|:.|...:...|::   ||:.::    :..|.|:    ||         .
  Rat   195 PSGICKSLHHLELLGLSENYLESLPKEIVNQTKLREIY----LKQNHFE----NF---------P 242

  Fly   263 CDLRRLTVYGVIHELDLHNNSLREMP----HIP------LAAN--------------VSSLDLSH 303
            |||..|....||   ||.:|.|:.:|    |:.      :|:|              :|.|||:|
  Rat   243 CDLCVLCNLEVI---DLDDNKLKTIPEDIGHLVRLQKFYVASNHLMGLPESLSHCRKLSVLDLTH 304

  Fly   304 NPLGN---------------LQGNPLRR-------FTSLLRLNLSATGAHELPEGLFKKQSHLQM 346
            |.:.:               |.||.|.:       :.||..|.|..|..|.|... ||...:|:.
  Rat   305 NSIHSLPYSLEQLTELTEVGLSGNRLEKVPRLLCNWVSLHLLYLRNTSLHGLRRS-FKHLVNLRF 368

  Fly   347 LDISGNSIYSLKITIFDSLKALQYFYFQQNNWNCDFLQLLMSSFVKRK--------DISFMEDI- 402
            ||:|.|.|....:.|. :||.|:......|  ....|...:||..|.|        .:||.|:| 
  Rat   369 LDLSQNHIDHFPVQIC-TLKDLEILALDDN--KVKQLPPAISSLSKLKILGLTGNDFVSFPEEIF 430

  Fly   403 TAPELVDDYVDGIACWYESDKQSKKCESGGSDAAMELSVVRNEIKTFTELVE 454
            :...|...|:                   |.|...:||.:...||..|.|.|
  Rat   431 SLVSLEKLYI-------------------GQDQGSKLSSLPENIKKLTNLKE 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alrmNP_651393.1 leucine-rich repeat 91..114 CDD:275380 4/22 (18%)
LRR <100..426 CDD:443914 95/383 (25%)
leucine-rich repeat 115..138 CDD:275380 6/22 (27%)
leucine-rich repeat 139..162 CDD:275380 6/22 (27%)
leucine-rich repeat 163..186 CDD:275380 7/22 (32%)
leucine-rich repeat 187..210 CDD:275380 6/22 (27%)
leucine-rich repeat 211..283 CDD:275380 19/74 (26%)
leucine-rich repeat 284..319 CDD:275380 15/80 (19%)
leucine-rich repeat 320..343 CDD:275380 8/22 (36%)
leucine-rich repeat 344..365 CDD:275380 7/20 (35%)
Lrriq4XP_038959535.1 PRK15370 65..>342 CDD:185268 78/337 (23%)
leucine-rich repeat 111..133 CDD:275380 6/22 (27%)
leucine-rich repeat 134..156 CDD:275380 6/22 (27%)
leucine-rich repeat 157..204 CDD:275380 14/46 (30%)
leucine-rich repeat 205..250 CDD:275380 15/61 (25%)
LRR 207..539 CDD:443914 74/300 (25%)
leucine-rich repeat 251..273 CDD:275380 8/24 (33%)
leucine-rich repeat 274..296 CDD:275380 2/21 (10%)
leucine-rich repeat 297..319 CDD:275380 6/21 (29%)
leucine-rich repeat 320..342 CDD:275380 4/21 (19%)
leucine-rich repeat 343..365 CDD:275380 8/22 (36%)
leucine-rich repeat 366..388 CDD:275380 8/22 (36%)
leucine-rich repeat 389..411 CDD:275380 5/23 (22%)
leucine-rich repeat 412..434 CDD:275380 5/21 (24%)
leucine-rich repeat 435..460 CDD:275380 8/43 (19%)
leucine-rich repeat 461..483 CDD:275380 2/3 (67%)
leucine-rich repeat 484..506 CDD:275380
IQCG 559..599 CDD:467744
Blue background indicates that the domain is not in the aligned region.

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