DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10559 and nhr-246

DIOPT Version :10

Sequence 1:NP_651382.2 Gene:CG10559 / 43063 FlyBaseID:FBgn0039323 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_001256661.1 Gene:nhr-246 / 191499 WormBaseID:WBGene00014192 Length:386 Species:Caenorhabditis elegans


Alignment Length:443 Identity:92/443 - (20%)
Similarity:156/443 - (35%) Gaps:115/443 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LFEEL-LSKRYGGNYAGIK-SFKPEAG----LKPGE-NYSTIMLRLKLEVELQD---HTIENVSY 72
            |.|.: |:|.:......|| ..||:.|    |:..| .:.:::.:::|..:..|   |.:     
 Worm     5 LIENIPLTKEWLAELIEIKIGVKPKIGTVGILENSELGFMSLLRKVRLHFDNDDLPKHVV----- 64

  Fly    73 MLKTPYDFEMYREI------LRKNNMFAVERDV------FIQVIPELEQMYKDVGVEVKFGAKAY 125
             ||.|.:.:....:      ::..:...|||.:      :.::...|.:  |.:.:...:.|...
 Worm    65 -LKIPQNTKGCSVVENAGGGVKNVDHSVVERFMHNTECNYYKLFSSLSE--KPLQIPTTYLASKA 126

  Fly   126 EIDAPDDYVLLQ--------DLGPLGFRNVDRLEGLDMVHTKCVLKKMAQWHAVSATRIHLKGPY 182
            ...||...::|:        ||.| || |.|:|..        ::.::.:.|..|.|        
 Worm   127 GEKAPVPVIVLEMLEDCKLHDLIP-GF-NEDQLFK--------IVDELVKLHIFSLT-------- 173

  Fly   183 PQNYLQPTYADTMKESIEQVAETLGKYFLKCLPLYEGYEEYSAAVHKM--QPKI-VDLMYAMNTP 244
                     .:..||.:...::.....||:|:....|        .|:  .|:: |.|.|..||.
 Worm   174 ---------TEKWKEIVPDESKLAMSGFLQCMVADVG--------RKLAQNPELGVILSYVENTL 221

  Fly   245 DPQDFNALN----------------HGDCWTSNIMFKYEDESPEPIETYFVDLQLPKVTSVAYDL 293
            | .|.|.|.                |||.|...|::..||..     ...||.|.....|...||
 Worm   222 D-TDPNYLQKMRDEYINEERPSVICHGDLWAPQILWDKEDNI-----AGIVDWQATHRGSPMEDL 280

  Fly   294 IYFLLGSTKFEIQLSQFDYFIKYYHDHLVEHLRMLNYPEAKTPTLGFLHTQLLKYGRVGYHIAFI 358
            .:.|...|..:.:.:    |.|...||....|::      .....||..|...:...:.|:.:||
 Worm   281 HHILSTCTSVQNRKT----FTKPLLDHYYNKLKV------GLKEKGFKTTWTREEIDIEYNYSFI 335

  Fly   359 LCPPVLLDRTEDAN---LTDFVTETDNGDGLKLAMYSNARYKKHVSAILKWLN 408
            ..    ..||..||   ....|.:||.....:....|..|.|.::...::.||
 Worm   336 YG----ASRTIFANGFWANSPVLQTDGKPDPERIKESFVRCKSYLEDTIRELN 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10559NP_651382.2 EcKL 45..330 CDD:397213 64/327 (20%)
nhr-246NP_001256661.1 CHK 134..314 CDD:214734 49/230 (21%)

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