DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11878 and nhr-246

DIOPT Version :9

Sequence 1:NP_651369.1 Gene:CG11878 / 43050 FlyBaseID:FBgn0039310 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_001256661.1 Gene:nhr-246 / 191499 WormBaseID:WBGene00014192 Length:386 Species:Caenorhabditis elegans


Alignment Length:338 Identity:74/338 - (21%)
Similarity:122/338 - (36%) Gaps:107/338 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 NVDRERDSIIFEDMSLDHYKV--ACRRKKLDLEHTHL-------------VLEKLALFHAASSVL 180
            |||.........:...::||:  :...|.|.:..|:|             |||.|     ....|
 Worm    86 NVDHSVVERFMHNTECNYYKLFSSLSEKPLQIPTTYLASKAGEKAPVPVIVLEML-----EDCKL 145

  Fly   181 AERQPG--------IFDKNYDRGFFNKHTRAYAPI--------MTNLLEAL----SRSLASDEEL 225
            .:..||        |.|:......|:..|..:..|        |:..|:.:    .|.||.:.||
 Worm   146 HDLIPGFNEDQLFKIVDELVKLHIFSLTTEKWKEIVPDESKLAMSGFLQCMVADVGRKLAQNPEL 210

  Fly   226 GQRYKAKIDRLVERLMDYGERSTTSSPG-------DFL------TLAHGDLWTTNFMFQYDAKEH 277
            |.            ::.|.|.:..:.|.       :::      .:.|||||....::.   ||.
 Worm   211 GV------------ILSYVENTLDTDPNYLQKMRDEYINEERPSVICHGDLWAPQILWD---KED 260

  Fly   278 PTNAIFIDFQFSVWNSPAIDLHYFFSTSLQDNLRLEHQTELVQFYYYRLTEALRK---------- 332
            ....| :|:|.:...||..|||:..||......|......|:..||.:|...|::          
 Worm   261 NIAGI-VDWQATHRGSPMEDLHHILSTCTSVQNRKTFTKPLLDHYYNKLKVGLKEKGFKTTWTRE 324

  Fly   333 ---LKY-----AGRIPSLFDFQLQFRSRGFYAVFCSLIFEPVMQYEGKEDASIEQVLSSSESGMR 389
               ::|     .|...::|       :.||:|      ..||:|.:||.|.  |::   .||.:|
 Worm   325 EIDIEYNYSFIYGASRTIF-------ANGFWA------NSPVLQTDGKPDP--ERI---KESFVR 371

  Fly   390 FKNSVYESENIKK 402
            .|:  |..:.|::
 Worm   372 CKS--YLEDTIRE 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11878NP_651369.1 EcKinase 47..335 CDD:281023 55/264 (21%)
nhr-246NP_001256661.1 CHK 134..314 CDD:214734 46/200 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.