DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup358 and AT1G52380

DIOPT Version :10

Sequence 1:NP_001247302.1 Gene:Nup358 / 43041 FlyBaseID:FBgn0039302 Length:2718 Species:Drosophila melanogaster
Sequence 2:NP_564606.1 Gene:AT1G52380 / 841668 AraportID:AT1G52380 Length:440 Species:Arabidopsis thaliana


Alignment Length:392 Identity:91/392 - (23%)
Similarity:146/392 - (37%) Gaps:95/392 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1152 PQVAPSVPAQP-------PAPAPVSVPSMFNRALNNQPVEKEPPANVVITSSDPLPKPTTASVQP 1209
            |..||...:.|       |..||.|.|...|..|..   .|..||..|:..:.     ..:.::.
plant    62 PSAAPVAASNPFAGIQLVPTTAPASTPVGTNAPLAE---SKLAPAEAVVEDNQ-----KASDIEE 118

  Fly  1210 TLSVTIPAQHIKPSLVQAPEQ----------PAQSAQPAQPSVSGVGSLSFNF------GSKSSE 1258
            ...|......:|.::.:..|:          .:...|.|...|:.:.|...|.      |:..::
plant   119 GDEVDSKKVDVKDAVGEETEKTKDKDDNHCGKSADVQVAATEVAQMVSCDTNVCNNAVEGTDQTD 183

  Fly  1259 SPFSFKTQVAKAAAEKQKEQ---EEAEQN------------------------------------ 1284
            .|.. |......|.:|:||.   |||::|                                    
plant   184 FPLE-KDSGGDQAEKKEKEGNGIEEADKNGDNGAFSSFQQHSSNKNAFTGLASTEASGSSFSFGL 247

  Fly  1285 --QSGATDPNKT----LPQDTSADDYDPRPDFKPII--------PLPDEVEVRTGEEGEDIKFTS 1335
              |.|:|.....    ||...|:..:....  ..||        |...||...||||.|.:.|::
plant   248 VSQDGSTGTGSLFGFGLPSSNSSSIFGATG--SSIIKKSEGSGFPPKQEVSTETGEENEKVAFSA 310

  Fly  1336 RAKLFRYVDKEWKERGTGVIKILCDKATGVSRVLMRRDQTHKVCANHTITADITINVANQDKDKK 1400
            .:.:|.|:|..|||||.|.:|:......|.:|::||....:::..|.::..:  :.:||.  |||
plant   311 DSIMFEYLDGGWKERGKGELKVNVSSNDGKARLVMRAKGNYRLILNASLYPE--MKLANM--DKK 371

  Fly  1401 SLLWA-ANDFADEQVTLERFLVRFKTGELAEEFRVAFTKASEA---AKSKETVKPTVNTAEKGST 1461
            .:.:| .|..::.:..|..|.::||...:.||||||..|..::   .|:.|.....:.|.|...|
plant   372 GITFACVNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKSALPLKTPENSPT 436

  Fly  1462 AT 1463
            ||
plant   437 AT 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup358NP_001247302.1 LapB <30..204 CDD:442196
TPR repeat 58..90 CDD:276809
PHA03247 <1030..1308 CDD:223021 40/223 (18%)
RanBD1_RanBP2_insect-like 1324..1442 CDD:269992 39/118 (33%)
RanBD2_RanBP2_insect-like 1620..1737 CDD:269993
ZnF_RBZ 1772..1796 CDD:197784
RanBP2-type Zn finger 1774..1793 CDD:275376
Nucleoporin_FG2 1806..>1985 CDD:435043
RanBP2-type Zn finger 1833..1861 CDD:275375
zf-RanBP 1891..1917 CDD:395516
RanBP2-type Zn finger 1894..1913 CDD:275376
RanBD3_RanBP2_insect-like 2034..2148 CDD:269994
RanBD4_RanBP2_insect-like 2571..2694 CDD:269995
AT1G52380NP_564606.1 NUP50 13..77 CDD:462629 4/14 (29%)
Nucleoporin_FG 221..289 CDD:463941 8/69 (12%)
RanBD_NUP50_plant 299..415 CDD:269990 39/119 (33%)
Blue background indicates that the domain is not in the aligned region.

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