DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup358 and Gcc2

DIOPT Version :9

Sequence 1:NP_001247302.1 Gene:Nup358 / 43041 FlyBaseID:FBgn0039302 Length:2718 Species:Drosophila melanogaster
Sequence 2:NP_081651.2 Gene:Gcc2 / 70297 MGIID:1917547 Length:1680 Species:Mus musculus


Alignment Length:1137 Identity:215/1137 - (18%)
Similarity:393/1137 - (34%) Gaps:376/1137 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TTRKEVDAHVHKM------------------------LGKLQPGRERDIKGLAVARLYMKVQEYP 43
            |:.||.:|.::|:                        |.::......:.:..:||     :||.|
Mouse   260 TSAKEHEAEINKLKENRVTQCEASENIPEKYQCESENLNEVASDASPESQNCSVA-----LQEDP 319

  Fly    44 KAIEYLNGYLRVRDDAV-----GHNMIATCYSRLNPPDVTEAL--QHYQRSIQIDPRQSEVVIDA 101
            .|.:.:...:|..:|::     .|:::....:.:|...:...:  ||.:.....:....|..|:.
Mouse   320 SAEQTVCDKVRQLEDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINE 384

  Fly   102 CELLVKENNASITECARYWLDQAN-----SLDLSGNKQVFNLRMRVNLADSNGERDDTSGGDGEQ 161
            . ||.||....:.|..:|..:..|     ::: ..||::..|:.......|.......||.:.|:
Mouse   385 L-LLAKEEQGYVVEKLKYEREDLNRQLCCAVE-QHNKEIQRLQEHHQKEVSELSETFISGSEKEK 447

  Fly   162 NTL--EILMYKE----LQARPQDVNIRIQLLRSYVEKMKIDQAFNYALKTEL-ESKNCTSQSNEW 219
            ..|  ||...||    ||...|:|.:..:.||   |.|:|       |:||| ||....||..|.
Mouse   448 LALMFEIQGLKEQCENLQHEKQEVVLNYESLR---EMMEI-------LQTELGESAGKISQEFET 502

  Fly   220 YEQIWMVLFKIEMAKDVKKNWRFWHFALHTLDRLVQL--SLEGSG-------------------- 262
            .:|        :.|.||.:..:....|.:..|.|::.  .|:|..                    
Mouse   503 MKQ--------QQASDVHELQQKLRSAFNEKDALLETVNRLQGENEKLLSQQELVPELESTIKNL 559

  Fly   263 LADSSKQLFRL---------------------DQYLFKFSTSIERSGDAPQRDLHQACIDHFTGQ 306
            .||:|..|..|                     |.::.|..||.|.     ..||||         
Mouse   560 QADNSMYLASLGQKDTMLQELEAKISSLAKEKDDFISKIKTSHEE-----MDDLHQ--------- 610

  Fly   307 LLLHAVTLIFKREVLANKNKWMSTLRSALPLLLLGYQVRPIDDSSTNQWIKHCDAEQKQLIQMWR 371
                               ||....|       |..::|    .:..|..:| ::|.:|.:.   
Mouse   611 -------------------KWEREQR-------LSVELR----EAAGQAAQH-NSELRQRVS--- 641

  Fly   372 PQGAFRCAQLGRTLLGCLD-----RSQ------MEIKNDRENAE---------FDENKNSGNSMP 416
                        .|.|.||     :||      :::|...|:.|         ::||....:...
Mouse   642 ------------ELTGKLDELVREKSQNDQSITVQMKTMTEDQEALSSKIKSLYEENNRLHSEKA 694

  Fly   417 GLFADSEELLASAHQQCLDKSWRSQIYQQLFTHAEH------KL------KDTSSHLVRNLRLQ- 468
            .|..|.|.|.|                ||.|.|.||      ||      :|..:.|:.|.::| 
Mouse   695 QLSRDLEALQA----------------QQDFAHKEHVAEFEKKLQLMVEERDDLNKLLENEQVQK 743

  Fly   469 ----LPLFEWPNLAHIENYELQALVLPPHSLAQHVYL--ALGTDPNKLGDAP-RVVF-YEGFQRD 525
                ..|:|:..       :|:|.:|..:.....|.|  |:|....|:.:.. .:|| |:....:
Mouse   744 SFVKTQLYEYLK-------QLRASILEENEEEDVVKLIQAVGESLVKVKEEEHNLVFEYDARVLE 801

  Fly   526 VKQNLNYCGQDSISQVDVDLYLYATTIQTRRKLQIQREV-----------YDSSNLGNRNAAARP 579
            ::..:....:||..|.:....|...:.|  .|:.:::|:           .|...:.|.|..|..
Mouse   802 LENKIKCLQEDSAVQCEELRTLVRDSEQ--EKILLRKELDAVTSAKEALQLDLLEMKNTNEKASL 864

  Fly   580 HMMPFANLVGQLGAP-----EQSNWWDLVVRLNSNQLITEGNRAEQRAQLQHGLEAVRGVNGPKA 639
            .....:..|.:|...     |..:...||:...:.:|:.:...:|        |:.||      |
Mouse   865 ENQTLSTQVEELSQTLHSRNEVHDEKVLVIEHENLRLLLKQRESE--------LQDVR------A 915

  Fly   640 DAIII-FQLGKILNSRSDRSS----LEARIDTLYRQG---------FSILRHQHNQQMESYVRVF 690
            :.|:: ..|.|..:.::|:.|    ||.:|::|.::.         ..::..:..::::|..:  
Mouse   916 ELILLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVKAKKELDSNRK-- 978

  Fly   691 KYGSAGSTAAWQDLQSLAEEAVTYFSEKMFRIGQYEQFLDEVRGL-HLPMAYFLQSEAC------ 748
                        :.|:|.||..:..|||.......::||...... .|.:.|..|||..      
Mouse   979 ------------EAQTLREELESVRSEKDRLSASMKEFLQGAESYKSLLLEYDKQSEQLDVEKER 1031

  Fly   749 -----HHLEESSKLPRTSRDRYSER----------RRECLQKTQKLIKND-----------DKHP 787
                 .|:|:.:|..|.|..:| ||          |.|.||...||::..           :|..
Mouse  1032 AHNFERHIEDLTKQLRNSTCQY-ERLTSDNEDLLARIETLQANAKLLEAQILEVQKAKGVVEKEL 1095

  Fly   788 LIAAMHRHQQDRNSRGIDNSFGSPDVHNNSSAYEDAEDDFYSHAAFSANRSRRQLEVTPVTPIVM 852
            ....:.:.|:               :..:.|...:.|:     ......:.::||:.|       
Mouse  1096 DAEKLQKEQK---------------IKEHVSTVNELEE-----LQLQFQKEKKQLQKT------- 1133

  Fly   853 AQPSQEMEQAVKQISKSLCVLKDDVSVGMEAMRQDIKVLTEKFTGLEDLLKKIKISSRDTPTRDV 917
               .||:| .||:.::...::..:::.....|::..:.||.|.:.:|||.:::||......|   
Mouse  1134 ---MQELE-LVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNSTIEDLEQEMKIQKEKQET--- 1191

  Fly   918 DPAAALGLDDLFIIEDALAEHQQQQQHQQQQS 949
                         :::.:...|...||.::::
Mouse  1192 -------------LQEEITSLQSSVQHYEEKN 1210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup358NP_001247302.1 TPR <14..128 CDD:223533 23/149 (15%)
TPR repeat 58..90 CDD:276809 5/38 (13%)
Atrophin-1 <1030..1308 CDD:331285
RanBD1_RanBP2_insect-like 1324..1442 CDD:269992
RanBD2_RanBP2_insect-like 1620..1737 CDD:269993
RanBP2-type Zn finger 1774..1793 CDD:275376
Nucleoporin_FG2 1806..>1986 CDD:330420
RanBP2-type Zn finger 1833..1861 CDD:275375
zf-RanBP 1891..1917 CDD:279035
RanBP2-type Zn finger 1894..1913 CDD:275376
RanBD3_RanBP2_insect-like 2034..2148 CDD:269994
RanBD4_RanBP2_insect-like 2571..2694 CDD:269995
Gcc2NP_081651.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
SMC_prok_B 95..849 CDD:274008 137/698 (20%)
TMPIT 104..>203 CDD:285135
SMC_prok_B 624..1386 CDD:274008 130/704 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1468..1522
Rab_bind 1544..1608 CDD:293309
Mediates interaction with RAB9A. /evidence=ECO:0000250 1570..1680
Mediates interaction with RAB6A. /evidence=ECO:0000250 1570..1609
GRIP 1610..1652 CDD:279767
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5171
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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