DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup358 and RanBP3

DIOPT Version :10

Sequence 1:NP_001247302.1 Gene:Nup358 / 43041 FlyBaseID:FBgn0039302 Length:2718 Species:Drosophila melanogaster
Sequence 2:NP_651178.1 Gene:RanBP3 / 42804 FlyBaseID:FBgn0039110 Length:449 Species:Drosophila melanogaster


Alignment Length:458 Identity:105/458 - (22%)
Similarity:166/458 - (36%) Gaps:105/458 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  1127 TAPAPPIAGTVNPPATTAVPPPVHIPQVAPSVPAQPPAPAPVSVPSMFNRALNNQPVEKE----- 1186
            |..|..:.|.|..||..|.....:....:||...              :.||.|.|..:|     
  Fly    19 TLKASRLGGAVLRPAVLANSSGSNNSSTSPSAGE--------------DSALLNNPFLRESKDDD 69

  Fly  1187 PPANVVITSS------------------DPLPKPTTASVQPTLSVTIPAQHIKPSL--------- 1224
            ....||.|.|                  |||.|..:..::.: |:...|::..|::         
  Fly    70 DDEEVVATGSAAAESTGDKEDDDVDERPDPLTKLRSNGIERS-SMFAAAKNNMPNVQSSGFVFGQ 133

  Fly  1225 -----VQAPEQPAQSAQP----AQPSVSGVGSLSFNFGSKSSESPFSFKTQVAKAAAEKQKEQEE 1280
                 |.||.....:|:|    |..|||...:.|.:..:.||.:|..|.:.:..||...:..:..
  Fly   134 NVHERVVAPNAEQVTAEPDADTAASSVSAQEAASSSTAATSSSAPLLFSSVIQNAAQTTETSEAA 198

  Fly  1281 AEQNQSGATDPNKTLPQDTSADDY-----DPRPDFKPIIPLPDEVEVRTGEEGEDIKFTSRAKLF 1340
            |..:...::..||...:..|..|.     :.|...:..    :|||..||||.|........|||
  Fly   199 ASSSICSSSSNNKESAEAKSLTDVAREYEESRAQKRKY----EEVETFTGEEDEINIIDVSCKLF 259

  Fly  1341 RYVDKEWKERGTGVIKILCDK-ATGVSRVLMRRDQTHKVCANHTITADITINVANQDKDKKSLLW 1404
            .:::..|:|||.|.:::...| ..|.|||:.|.....::..|..:.|.:....|:|    |||..
  Fly   260 AFLNSNWEERGRGSLRLNDAKDLRGDSRVVFRTSGNLRLLLNTKVWAAMVAERASQ----KSLRL 320

  Fly  1405 AANDFADEQVTLERFLVRFKTGELAEEFRVAFTKASEAAKSKETVKPTVNTAEKGSTATAPAAFK 1469
            .|   .|....::.||...:..::|:..:         |.|:...|..|:..|:.|...|    |
  Fly   321 TA---IDNSGVVKIFLAMGRPADIAQLHK---------ALSERIAKRKVSHPEECSVEEA----K 369

  Fly  1470 SFVTSTPAANSLINKPQEQTKTQPNPDPPATAAKSLFGTLSVSA------------APATSAPAS 1522
            :.|.|..||:.     |.::.|..:.|..|....|  |.:|..|            .|.:||...
  Fly   370 NGVASEAAASL-----QPESTTHDDEDEDAAPGPS--GAISAEADSYGPSPKKVIVQPDSSADVP 427

  Fly  1523 ATP 1525
            ..|
  Fly   428 VPP 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup358NP_001247302.1 LapB <30..204 CDD:442196
TPR repeat 58..90 CDD:276809
PHA03247 <1030..1308 CDD:223021 46/226 (20%)
RanBD1_RanBP2_insect-like 1324..1442 CDD:269992 31/118 (26%)
RanBD2_RanBP2_insect-like 1620..1737 CDD:269993
ZnF_RBZ 1772..1796 CDD:197784
RanBP2-type Zn finger 1774..1793 CDD:275376
Nucleoporin_FG2 1806..>1985 CDD:435043
RanBP2-type Zn finger 1833..1861 CDD:275375
zf-RanBP 1891..1917 CDD:395516
RanBP2-type Zn finger 1894..1913 CDD:275376
RanBD3_RanBP2_insect-like 2034..2148 CDD:269994
RanBD4_RanBP2_insect-like 2571..2694 CDD:269995
RanBP3NP_651178.1 RanBD_RanBP3 243..352 CDD:270001 33/124 (27%)
Blue background indicates that the domain is not in the aligned region.

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