| Sequence 1: | NP_001247302.1 | Gene: | Nup358 / 43041 | FlyBaseID: | FBgn0039302 | Length: | 2718 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_006256437.1 | Gene: | Gcc2 / 309798 | RGDID: | 1305732 | Length: | 1681 | Species: | Rattus norvegicus |
| Alignment Length: | 1048 | Identity: | 193/1048 - (18%) |
|---|---|---|---|
| Similarity: | 388/1048 - (37%) | Gaps: | 296/1048 - (28%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 35 LYMKVQEYPKAIEYLNGYLRVRDDAVGHNMIATCYSRLNPPDVTEALQHYQRSIQIDPRQSEVVI 99
Fly 100 DACELLVKENNASITECARYWLDQAN-----SLDLSGNKQVFNLRMRVNLADSNGERDDTSGGDG 159
Fly 160 EQNTL--EILMYKE----LQARPQDVNIRIQLLRSYVEKMKIDQAFNYALKTEL-ESKNCTSQSN 217
Fly 218 EWYEQIWMVLFKIEMAKDVKKNWRFWHFALHTLDRLVQ------------LSLEGSGLADSSKQL 270
Fly 271 FRLDQYLFKFSTSIERSGDAPQRDLHQACIDHFTGQLLLHAVTLIFKRE-----VLANKNKWMST 330
Fly 331 LRSALPLLLLGYQVRPIDDSSTNQWIKHCDAEQKQLIQMWRPQGAFRCAQLG-------RTLLGC 388
Fly 389 LDRSQMEIKNDRENAEFDEN------------KNSGNSMPGLFADSEELLASAHQQCLDKSWRSQ 441
Fly 442 IYQQLFTHAEH------KL------KDTSSHLVRNLRLQ-----LPLFEW-----PNLAHIENYE 484
Fly 485 LQALVLPPHSLAQHVYLALGTDPNKLGDAPRVVF-YEGFQRDVKQNLNYCGQDSISQVDVDLYLY 548
Fly 549 ATTIQTRRKLQIQREV-----------YDSSNLGNRNAAARPHMMPFANLVGQLGAP-----EQS 597
Fly 598 NWWDLVVRLNSNQLITEGNRAEQRAQLQHGLEAVRGVNGPKADAIII-FQLGKILNSRSDRSS-- 659
Fly 660 --LEARIDTLYRQG---------FSILRHQHNQQMESYVRVFKYGSAGSTAAWQDLQSLAEEAVT 713
Fly 714 YFSEKMFRIGQYEQFLDEVRGL-HLPMAYFLQSEAC-----------HHLEESSKLPRTSRDRYS 766
Fly 767 E---------RRRECLQKTQKLIKND-----------DKHPLIAAMHRHQQDRNSRGIDNSFGSP 811
Fly 812 DVHNNSSAYEDAEDDFYSHAAFSANRSRRQLEVTPVTPIVMAQPSQEMEQAVKQISKSLCVLKDD 876
Fly 877 VSVGMEAMRQDIKVLTEKFTGLEDLLKKIKISSRDTPTRDVDPAAALGLDDLFIIEDALAEHQQQ 941
Fly 942 QQHQQQQS 949 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Nup358 | NP_001247302.1 | TPR | <14..128 | CDD:223533 | 15/97 (15%) |
| TPR repeat | 58..90 | CDD:276809 | 3/31 (10%) | ||
| Atrophin-1 | <1030..1308 | CDD:331285 | |||
| RanBD1_RanBP2_insect-like | 1324..1442 | CDD:269992 | |||
| RanBD2_RanBP2_insect-like | 1620..1737 | CDD:269993 | |||
| RanBP2-type Zn finger | 1774..1793 | CDD:275376 | |||
| Nucleoporin_FG2 | 1806..>1986 | CDD:330420 | |||
| RanBP2-type Zn finger | 1833..1861 | CDD:275375 | |||
| zf-RanBP | 1891..1917 | CDD:279035 | |||
| RanBP2-type Zn finger | 1894..1913 | CDD:275376 | |||
| RanBD3_RanBP2_insect-like | 2034..2148 | CDD:269994 | |||
| RanBD4_RanBP2_insect-like | 2571..2694 | CDD:269995 | |||
| Gcc2 | XP_006256437.1 | SMC_prok_A | 28..832 | CDD:274009 | 115/592 (19%) |
| TMPIT | 108..>205 | CDD:285135 | |||
| Smc | <464..1245 | CDD:224117 | 166/902 (18%) | ||
| Smc | 904..1633 | CDD:224117 | 65/383 (17%) | ||
| Rab_bind | 1545..1609 | CDD:293309 | |||
| GRIP | 1611..1653 | CDD:279767 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_COG5171 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 1 | 0.900 | |||||