DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sil1 and sil1

DIOPT Version :9

Sequence 1:NP_651356.1 Gene:Sil1 / 43034 FlyBaseID:FBgn0039296 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_001096338.1 Gene:sil1 / 100124924 XenbaseID:XB-GENE-5898521 Length:453 Species:Xenopus tropicalis


Alignment Length:428 Identity:121/428 - (28%)
Similarity:194/428 - (45%) Gaps:52/428 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 VAAATETDNKTND---FVATDEWQTIAEGQAIPRGLHVRINLQTGLKEAKLLD------------ 70
            |.|..|.:....|   |..|.|||.:..|||:|.|||:|:|||||..||||.|            
 Frog    49 VEAFVENEQDPEDLEIFYPTQEWQVVKPGQAVPAGLHMRLNLQTGKNEAKLPDGQDGKDRPKQTH 113

  Fly    71 ESERGTSLQSQPDDQNARESHDDNEPLA----LDYKPDIIEESIRRVKEQKKSYAELRKAYKEFQ 131
            :|...:.:.|..:.:.|......:|.|:    .||:.||        |::.:...:|:||:.:..
 Frog   114 KSSTISDVYSTKELKEALAKFKGDEKLSPAEGKDYQQDI--------KQRFRPIEDLKKAFDDLN 170

  Fly   132 KNFRTDGELIVQLIDQFRNFSRTPLESEMRSKLDCLENLEYLLHQIDNALMFIDNGGLDDVLLPI 196
            .|..||.|::.::|::|.:.|.|.      .|:..|.:|||.:||:|||...:..|||.  ||..
 Frog   171 INVETDIEIMTKIINKFNSSSSTV------EKVSALYDLEYYVHQVDNAQNLLKLGGLQ--LLIN 227

  Fly   197 VVNDTSTSLRVSAMRVLGSLASNNPKAQIKVFEKNFGSHLAQILTSSGNVGEISAALHAFGALLR 261
            .:|.|...|...:..|:||..|:|||.||:.||......|..||.:...|......|:|..::||
 Frog   228 SLNSTDPLLIEHSAFVIGSALSSNPKVQIEAFEAGALQKLLVILAADQEVSVKKKTLYALSSMLR 292

  Fly   262 KFPLAQQRVLSTSGTQALIKVLQSPDVELRSKAKVVTLISDLVLEKRSVLDVSKDDPEASSTMAQ 326
            :||.||||.:...|.|.|....:..:|| ....:|:||:.|:::|| .:|....:..:......|
 Frog   293 QFPYAQQRFMKLGGLQILKNFFKEKNVE-PLYIRVITLLYDMIMEK-MLLHKENNTGQYEQKYQQ 355

  Fly   327 YVLLDFESWLKTPGYCAAVDTVLTKEFLLLLEQPEVVEQFATALETTEDMCTSTWSQSSGLRHAL 391
            |..::....:...|:|..:..      ||.|.:.:..|:....:......|.:.:.....||..|
 Frog   356 YNQINLLESIIEQGWCPIISD------LLKLPENDAREKVLKTVMILIPHCRAEFLNDENLRTIL 414

  Fly   392 LTVRNRY---------ANSTDEYRLEVSQILAKLCERL 420
            .::|..|         :...|.|..|:..:...:.::|
 Frog   415 NSLRKEYEGLAADELNSGEQDGYFSELLSLTISINDKL 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sil1NP_651356.1 SIL1 167..>326 CDD:374797 54/158 (34%)
sil1NP_001096338.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 148 1.000 Domainoid score I4416
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H32544
Inparanoid 1 1.050 149 1.000 Inparanoid score I4284
OMA 1 1.010 - - QHG48752
OrthoDB 1 1.010 - - D1501690at2759
OrthoFinder 1 1.000 - - FOG0005609
OrthoInspector 1 1.000 - - oto104162
Panther 1 1.100 - - LDO PTHR19316
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5248
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

Return to query results.
Submit another query.