DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cad96Cb and PCDHGA2

DIOPT Version :9

Sequence 1:NP_001287524.1 Gene:Cad96Cb / 43033 FlyBaseID:FBgn0039294 Length:789 Species:Drosophila melanogaster
Sequence 2:NP_061738.1 Gene:PCDHGA2 / 56113 HGNCID:8700 Length:932 Species:Homo sapiens


Alignment Length:578 Identity:147/578 - (25%)
Similarity:247/578 - (42%) Gaps:98/578 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 CYL-----EGGGSAESFLATEDLAVGSIIGK----LRINGDANAETGDINLSLREKNAPVEIHPG 86
            |:|     |.......:...|::..||.:|.    |.:...|.||.| :.:..|.::....::|.
Human    17 CFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQG-VRIVSRGRSQLFALNPR 80

  Fly    87 TKELALSVELDKEGV---RGPSSIYVNVICIRRHSTDPSFVIPVNVRVTDVNDNAPQWIGTPYTL 148
            :..|..:..:|:|.:   ..|..:..|::.     .|...:..|.|.:||:|||||::......|
Human    81 SGSLVTANRIDREELCAQSAPCLLNFNILL-----EDKLTIYSVEVEITDINDNAPRFGVEELEL 140

  Fly   149 TLSEVTVPGTRI-LQGARAEDADQPGPFSTVEYQVLPGPYSEYVQFLNPLEGT-------LVLKK 205
            .:||.|.||.|| |:  .|.||| .|..:..:|.:.|..:..    |:...|.       |||::
Human   141 KISETTTPGFRIPLK--NAHDAD-VGENALQKYALNPNDHFS----LDVRRGADGNKYPELVLER 198

  Fly   206 ALDYEQLQNFTVKLRAQDQGTPPRHSDTLLRVVITDADDQNPKFQRESYSAEIPADGRPGELRMR 270
            :||.|:.....:.|.|.|.|.|.....:.:.|.:.||:|..|.|.:..|...||.:...|   .|
Human   199 SLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPENTLVG---TR 260

  Fly   271 PEPLKAVDQDEGICAPIQYTIVQS--QDAKYFRIHPHNGAISLLTPIGYADVA---------NGA 324
            ...:.|.|.|||..|.:.|.:.:|  :.::.|.:...:|.::::..:.|.|..         :|.
Human   261 ILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDATFHEIDIEAQDGP 325

  Fly   325 TLVVKATQI-------DNPDRYALTTVQLTRPGSHSDLSTLAFVQKRFVMRIREDTAVGNRILAL 382
            .|:.:|..|       ||...:.:|:.    ..|.|:.|....:...|.:..|:.........:|
Human   326 GLLTRAKVIVTVLDVNDNAPEFYMTSA----TSSVSEDSLPGTIIGLFNVHDRDSGQNAFTTCSL 386

  Fly   383 PTNKPGKHLKYVIPDPVNSQFFSVGSLGELVLAKPLDYEKMTKHEFQVLATDG---MTNSTAELT 444
            |.:.|.|..|            ||.:...||..:.||.|:.:.:...:.|.||   ..::.|.:.
Human   387 PEDLPFKLEK------------SVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLSTDAHIL 439

  Fly   445 LEVIDVNDWEPRFRETHYEFMVPKSSLQSRADSFEGVLIGKVEAADGDRNDK-------LELSLR 502
            |:|.|:||..|.|..|.|...:|:::.:       |..:..|.|.|.|.||.       .|.:::
Human   440 LQVADINDNAPAFSRTSYSTYIPENNPR-------GASVFSVTAHDPDSNDNAHVTYSFAEDTVQ 497

  Fly   503 GQH-AGLFEIDS-TGNIY-MRP---EQLQSLNESTVHLIAIATDTGVPPRSTSVPVSV 554
            |.. :....|:| ||.:| :|.   |||:.|     .:..||.|:|.||.|::|.:|:
Human   498 GAPLSSYISINSDTGVLYALRSFDYEQLRDL-----QVWVIARDSGNPPLSSNVSLSL 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad96CbNP_001287524.1 Cadherin_repeat 46..137 CDD:206637 22/97 (23%)
Cadherin_repeat 145..244 CDD:206637 32/106 (30%)
Cadherin_repeat 253..347 CDD:206637 24/111 (22%)
Cadherin_repeat 365..452 CDD:206637 21/89 (24%)
Cadherin_repeat 461..555 CDD:206637 30/107 (28%)
PCDHGA2NP_061738.1 Cadherin_2 30..112 CDD:285466 16/87 (18%)
Cadherin_repeat 137..238 CDD:206637 32/107 (30%)
Cadherin_repeat 246..343 CDD:206637 21/99 (21%)
Cadherin_repeat 355..448 CDD:206637 25/104 (24%)
Cadherin_repeat 456..558 CDD:206637 30/107 (28%)
Cadherin_repeat 579..666 CDD:206637
Cadherin_C_2 688..772 CDD:293101
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 798..841
Cadherin_tail 809..>905 CDD:292596
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 902..932
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 131 1.000 Inparanoid score I4632
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.050

Return to query results.
Submit another query.