DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad96Cb and PCDHB5

DIOPT Version :10

Sequence 1:NP_001287524.1 Gene:Cad96Cb / 43033 FlyBaseID:FBgn0039294 Length:789 Species:Drosophila melanogaster
Sequence 2:NP_056484.2 Gene:PCDHB5 / 26167 HGNCID:8690 Length:795 Species:Homo sapiens


Alignment Length:700 Identity:165/700 - (23%)
Similarity:255/700 - (36%) Gaps:200/700 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 QWIYYAILSLCWFNKATLGAILDSRCYLEGGGSAESFLATE-------------DLAVGSIIGKL 57
            |.::.|||.|.|                |.|..|..:...|             ||.:|  :|:|
Human    13 QVMFLAILLLLW----------------EAGSEAVRYSIPEETESGYSVANLAKDLGLG--VGEL 59

  Fly    58 RINGDANAETGDINLSLREKNAPVEIHPGTKELALSVELDKE---GVRGPSSIYVNVICIRRHST 119
            ...|......|:..|        :::...|..|.|..:||:|   |...|..::..::.     .
Human    60 ATRGARMHYKGNKEL--------LQLDIKTGNLLLYEKLDREVMCGATEPCILHFQLLL-----E 111

  Fly   120 DPSFVIPVNVRVTDVNDNAPQWIGTPYTLTLSEVTVPGTRILQGARAEDADQPGPFSTVEYQVLP 184
            :|......::::||:||:||::......|.:.|.|.||| :.....|:|.| .|..:...|.:.|
Human   112 NPVQFFQTDLQLTDINDHAPEFPEKEMLLKIPESTQPGT-VFPLKIAQDFD-IGSNTVQNYTISP 174

  Fly   185 GPYSEYVQFLNPLEG----TLVLKKALDYEQLQNFTVKLRAQDQGTPPRHSDTLLRVVITDADDQ 245
            ..:. :|...|..:|    .|||.||||.|:....::.|.|.|.|.|||...|.:|:|:.|.:|.
Human   175 NSHF-HVATHNRGDGRKYPELVLDKALDREERPELSLTLTALDGGAPPRSGTTTIRIVVLDNNDN 238

  Fly   246 NPKFQRESYSAEIPADGRPGELRMRPEPLKAVDQDEGICAPIQYTIVQSQD-------------- 296
            .|:|.:..|..::|.:.....|.:   .:.|.|.|.|....:.|.:.|..:              
Human   239 APEFLQSFYEVQVPENSPLNSLVV---VVSARDLDAGAYGSVAYALFQGDEVTQPFVIDEKTAEI 300

  Fly   297 ----AKYFRIHPH---------NGAIS--LLTPIGYADVANGA------TL-----------VVK 329
                |..|...|:         .|.:|  ....|...||.:.|      ||           ||.
Human   301 RLKRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPENAPETVVA 365

  Fly   330 ATQIDNPDR-------------------------YALT---------------TVQLTRPGS--- 351
            ...:.:||.                         |.|.               |:.:|..|:   
Human   366 VFSVSDPDSGDNGRMICSIQNDLPFLLKPTLKNFYTLVTQRTLDRESQAEYNITITVTDMGTPRL 430

  Fly   352 ---H------SDL--STLAFVQKRFVMRIREDTAVGNRILALPTNKPGKHL-------------- 391
               |      ||:  :..||.|..:.:.:||:            |.|..|:              
Human   431 KTEHNITVLVSDVNDNAPAFTQTSYTLFVREN------------NSPALHIGSVSATDRDSGTNA 483

  Fly   392 --KYVIPDPVNS--QFFSVGSL----GELVLAKPLDYEKMTKHEFQVLATD---GMTNSTAELTL 445
              .|.:..|.|.  :..|:.|:    |.|...:.||||.:...||:|.|||   ...:|.|.:.:
Human   484 QVTYSLLPPQNPHLRLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRV 548

  Fly   446 EVIDVNDWEPRFRETHYEFMVPKSSLQSRADSFEGVLIGKVEAADGDRNDKLELS---LRGQHAG 507
            .|:|.||..|...........|.:.|..|| :..|.|:.||.|.|||......||   |:....|
Human   549 LVLDANDNSPFVLYPLQNGSAPCTELVPRA-AEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPG 612

  Fly   508 LFEIDSTGNIYMRPEQLQSLNESTVH-LIAIATDTGVPPRSTSVPVSVTM 556
            ||.: ...|..:|..:|.|..::..| |:.:..|.|.||||.:..:.|.:
Human   613 LFSM-WAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLL 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad96CbNP_001287524.1 CA_like <80..139 CDD:481204 13/61 (21%)
Cadherin_repeat 145..244 CDD:206637 34/102 (33%)
Cadherin_repeat 253..347 CDD:206637 27/179 (15%)
Cadherin_repeat 365..452 CDD:206637 26/111 (23%)
Cadherin_repeat 461..555 CDD:206637 30/97 (31%)
PCDHB5NP_056484.2 Cadherin_2 30..112 CDD:462413 18/96 (19%)
Cadherin_repeat 140..238 CDD:206637 34/100 (34%)
Cadherin_repeat 247..342 CDD:206637 17/97 (18%)
Cadherin_repeat 356..446 CDD:206637 12/89 (13%)
Cadherin_repeat 454..556 CDD:206637 27/113 (24%)
Cadherin_repeat 575..663 CDD:206637 29/88 (33%)
Cadherin_C_2 684..767 CDD:465139
Blue background indicates that the domain is not in the aligned region.

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