DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cad96Cb and LOC100493106

DIOPT Version :9

Sequence 1:NP_001287524.1 Gene:Cad96Cb / 43033 FlyBaseID:FBgn0039294 Length:789 Species:Drosophila melanogaster
Sequence 2:XP_002933685.2 Gene:LOC100493106 / 100493106 -ID:- Length:805 Species:Xenopus tropicalis


Alignment Length:794 Identity:169/794 - (21%)
Similarity:295/794 - (37%) Gaps:234/794 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 W-IYYAILSLCWFNKATLGAILDSRCYLEGGGSAE-SFLATEDLAVGSIIGKLRINGDANAETGD 69
            | :.:.||||                 |.|.|..: .:...||...||:||.:     ||    |
 Frog     5 WQVRFFILSL-----------------LYGAGYGQIQYSVQEDQKEGSVIGNI-----AN----D 43

  Fly    70 INLSLRE------------KNAPVEIHPGTKELALSVELDKEGVRGPSSIYVNVICIRRHSTDPS 122
            :||:::|            |...::::....:|.:..::|:|...|...:.  ::.::....:|.
 Frog    44 LNLNVQELSIRKFHIISRTKQQYIDVNLENGDLFIKEKIDRETFCGTEKMC--LLNLKAVIENPL 106

  Fly   123 FVIPVNVRVTDVNDNAPQWIGTPYTLTLSEVTVPGTRILQGARAEDAD------QPGPFSTVEYQ 181
            .:..:.|.:.|:|||||.:....:...:||..:|..|...| .|:|:|      |....|..||.
 Frog   107 QIFTIKVEIEDINDNAPSFSKKYFEAEISESALPNARFALG-YAQDSDIGTNSVQSYSLSENEYF 170

  Fly   182 VLPGPYSEYVQFLNPLEGTLVLKKALDYEQLQNFTVKLRAQDQGTPPRHSDTLLRVVITDADDQN 246
            :| |..:.....:.|   .|||:|.||.|:..:..:.|.|.|.|:|.:.:..|:::|:.||:|..
 Frog   171 IL-GEKTNSDGHVYP---ELVLEKPLDREKQSSIELSLTASDGGSPRKTATALIKIVVLDANDNY 231

  Fly   247 PKFQRESYSAEIPADGRPGELRMRPEPLKAVDQDEGICAPIQYTI--VQSQDAKYFRIHPHNGAI 309
            |.|.:::|...:..:...|.|.::   |:|.|.|:|..|.|.|:.  :..:..:.|:|:..||.|
 Frog   232 PAFSQDTYQVTLSENAPDGFLVIQ---LQATDDDDGSNAQITYSFSHISEKGDQIFQINTENGEI 293

  Fly   310 SLLTPIGYADVANGATLVVKA-------------TQI---------------------DNPDRYA 340
            ..:..:.| :|.....:.|:|             .||                     |:|....
 Frog   294 KKIGALDY-EVTKNYKITVEAKDGGGLFSYCEVSVQIIDANDNTPEIQINSFLSVIPEDSPPETV 357

  Fly   341 LTTVQL-----------------TRP-------GSHSDLSTLA---------------------- 359
            :..:.:                 |.|       .|:..:.||:                      
 Frog   358 IALINIHDLDSGENGEVVCQISDTLPFQLISLTESYYKIVTLSRMDREIIPEYNISIIAKDKGTP 422

  Fly   360 ---------------------FVQKRFVMRIREDTAVGNRILA-----LPTNKPGKHLKYVIPDP 398
                                 |.:..:|..:.|:.:.|..:|.     |..|:.|:.:..:|...
 Frog   423 SLSSTKIMQVILTDVNDNIPVFEKANYVAYVPENNSPGMAVLRVNALDLDINENGQIVYSIINTD 487

  Fly   399 VN----SQFFSVGS-LGELVLAKPLDYEKMTKHEFQVLATD-GMTNSTAELTLEV--IDVNDWEP 455
            :.    |...|:.| .|.:......|||:|.:.:|||:|.| |:.:.::..|:.|  .|.||..|
 Frog   488 IQDISISSHVSINSGTGVIYALHGFDYEQMREFQFQVMAKDSGIPSLSSNATIRVCITDKNDNSP 552

  Fly   456 RFRETHYEFMVPKSSLQSRA-------DSFEGVLIGKVEAADGDRNDKLELS---LRGQHAGLFE 510
            :       .:.|.|..:..|       .|.:|.|:.||.|.|.|......||   ::.|...:|.
 Frog   553 K-------ILYPSSDTEGTAVYELIPHSSEKGYLVTKVIAVDADSGHNSWLSYHLIQVQDPSIFT 610

  Fly   511 IDS-TGNIYMRPEQLQSLNESTVHLIAIATDTGVP-------------------PRSTSVPVSVT 555
            |.. ||.|.: ....|..:.|...::.:..|.|.|                   |..::.|:.:.
 Frog   611 IGQYTGEIRL-TRDFQETDSSRQKIVVMVKDNGEPSLSATVTLNLLIAENFQVIPEISNTPIKLD 674

  Fly   556 MEGLTLARSGWNSNMLGMFGMIMGL----FLMIIVALSCYIVRSKKQGKSASSGLG-LGRN---R 612
            ...:|             |.:::.:    ||.|:..:...|  ||.:..|:....| |.||   :
 Frog   675 TPDVT-------------FYLVIAIAIISFLFILAVIGTVI--SKCRSSSSPGTFGTLTRNIYPQ 724

  Fly   613 VHSQAHSSVSSANL 626
            ...|..|.||...|
 Frog   725 YAFQYPSQVSDGTL 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad96CbNP_001287524.1 Cadherin_repeat 46..137 CDD:206637 21/102 (21%)
Cadherin_repeat 145..244 CDD:206637 31/104 (30%)
Cadherin_repeat 253..347 CDD:206637 24/146 (16%)
Cadherin_repeat 365..452 CDD:206637 25/99 (25%)
Cadherin_repeat 461..555 CDD:206637 26/123 (21%)
LOC100493106XP_002933685.2 Cadherin_2 22..104 CDD:400525 17/92 (18%)
Cadherin_repeat 130..230 CDD:206637 31/104 (30%)
Cadherin_repeat 238..335 CDD:206637 22/100 (22%)
Cadherin_repeat 348..440 CDD:206637 7/91 (8%)
Cadherin_repeat 449..550 CDD:206637 26/100 (26%)
Cadherin_repeat 573..656 CDD:206637 21/83 (25%)
Cadherin_C_2 677..761 CDD:406805 18/77 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 119 1.000 Inparanoid score I4624
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

Return to query results.
Submit another query.