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Protein Alignment Cad96Ca and kdrl

DIOPT Version :10

Sequence 1:	NP_651349.1	Gene:	Cad96Ca / 43026	FlyBaseID:	FBgn0022800	Length:	773	Species:	Drosophila melanogaster
Sequence 2:	NP_571547.1	Gene:	kdrl / 796537	ZFINID:	ZDB-GENE-000705-1	Length:	1301	Species:	Danio rerio

Alignment Length:	882	Identity:	229/882 - (25%)
Similarity:	334/882 - (37%)	Gaps:	311/882 - (35%)

- Green bases have known domain annotations that are detailed below.

  Fly    94 EPRFSLPGGENDASPPEKIPFQIDRETGV-VTLNESLAGRAGQNFLI---------YITVT---- 144
            |||.      |....|:::.:..|   || ::.|.:....||.|..|         ..|:.
Zfish   346 EPRV------NAVPAPDRVLWYKD---GVAISENSTCYETAGYNLTIKQVRQKDAGIFTIALSNQ 401

  Fly   145 ------DGSYTAKNEVFINILGERENSSGYRPQTSISNVVHNISQFLPRFDQLPGVQSIRNGLPN 203
                  :.||..:..|...|..|....:|  |||.             |:||...:.....|:|
Zfish   402 ERGLYRNISYKLEVRVKPKIFEEDVAPAG--PQTF-------------RYDQRHKLTCTAFGIP- 450

  Fly   204 SRPG---GWYPPVPQNNI------FGPPPFGN--NYPPPP------------------------- 232
             .|.   .|.|..|..|:      ..|.|..|  ::|..|
Zfish   451 -MPNITWFWQPCDPSANLTECKLYTDPLPIENVDDFPQNPIKDVNSKVGLLKSKNRTISTLVVKT 514

  Fly   233 PNIPGV-----RGEQSGE--------EEQPDE-EVTPTTPVR---ISSTTPKSRTKLTPITANNS 280
            .|:.||     |.|....        ::.|.. |:.|:|.|.   |:.|...:|.....:|..:.
Zfish   515 ANVSGVYSCTARNELGNRTMRIPFYVDDHPQPFEIEPSTAVAGDDITLTCRGTRYLYDRLTWYDP 579

  Fly   281 TRVESAIPAETTTPSGGHHNNSSSPITI-FSLKSGTIPIVVTVGGFFVAIAVLLAYLCRRRLCAI 344
            ...:  :|.:.||       ....|.|| .|:|...:....|:|           |.|:    |:
Zfish   580 LGYK--VPKDETT-------LRIEPYTISLSIKLPNVSRNHTLG-----------YECQ----AL 620

  Fly   345 SRTLKKTKEKEELAKKSNQSQLSSTLTDDSRNSMVMQQWQGPVAFAN------------------ 391
            :....|.            ..::|.||.|.|        |||....|
Zfish   621 NINTNKV------------VNVTSALTIDER--------QGPWLMQNLTNQDVNSSSTLTLACLA 665

  Fly   392 -----RYVPWERDQQMGIATSQLSTGVTNGGVSSPGV--PSPGT--------------------- 428
                 .::.|.:|:          |.||.|    ||:  ...||
Zfish   666 YGVPAPFITWYKDK----------TPVTEG----PGITLKDDGTLIIERVKKDDEGIYECRASND 716

  Fly   429 -------------GEPGS-NLGPGCL--TGGAGS----------------SGA------------ 449
                         ||.|. |:....|  ||.|.:                |.|
Zfish   717 GGEAKTSAVITVVGEDGKPNIEVIILVSTGAAATFLWIMLILFIRKLRKPSSADLKTGYLSIIMD 781

  Fly   450 PENAFAGEANCDR-------WEFPRYRLKFFNILGEGAFGQVWRCEATNINGNEGITTVAVKTLK 507
            ||.....| .|||       ||||:.||:....||.||||:|....|..|:......|||||.||
Zfish   782 PEQMPLDE-QCDRLPYDSNKWEFPQDRLRLGKTLGHGAFGKVVEASAFGIDKISTCKTVAVKMLK 845

  Fly   508 ESATEVDRKDLLSELEVMKSLEPHINVVHLLGCCTDK-DPTFVILEYVNRGKLQTYLRSSRAE-R 570
            ..||..:.:.|:|||:::..:..|:|||:|||.||.: .|..:|:|:...|.|..||||.|.: .
Zfish   846 VGATNNEWRALMSELKILIHIGHHLNVVNLLGACTKRGGPLMIIVEFCKYGNLSNYLRSKRGDFV 910

  Fly   571 HYGNTHGKS----------------------------------------------------NVLT 583
            .|.:..||:                                                    .|||
Zfish   911 VYKSQDGKAVRSSSGCDLSELIKRRLESVASTGSSASSGFIEDKSYCDSEEEEEEQEDLYKKVLT 975

  Fly   584 SCDLTSFMYQVAKGMDYLTSRGIIHRDLAARNILITDDHTCKVADFGFARDVITSKIYERKSEGK 648
            ..||..:.:||||||::|.||..|||||||||||:::::..|:.|||.||||.....|.||.:.:
Zfish   976 LEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDVYKDPDYVRKGDAR 1040

  Fly   649 LPIRWMATESLYDNIFSVKSDIWSFGILMWEIVTLGSTPYPGISA-ADVMRKVRDGYRLEKPEHC 712
            ||::|||.|:::|.|::.:||:||||:|||||.:||::||||:.. .:...::::|.|::.||:.
Zfish  1041 LPLKWMAPEAIFDKIYTTQSDVWSFGVLMWEIFSLGASPYPGLHIDEEFCCRLKEGTRMKAPEYS 1105

  Fly   713 RRELYNIMYYCWSHDPQERPLFAEIIQMLDKLLHTEM 749
            ..|:|..|..||..:|.:||.|.|:::.|..||...:
Zfish  1106 SSEIYQTMLDCWHGEPSQRPTFTELVERLGDLLQASV 1142

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.