DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cad96Ca and RET

DIOPT Version :10

Sequence 1:NP_651349.1 Gene:Cad96Ca / 43026 FlyBaseID:FBgn0022800 Length:773 Species:Drosophila melanogaster
Sequence 2:NP_066124.1 Gene:RET / 5979 HGNCID:9967 Length:1114 Species:Homo sapiens


Alignment Length:331 Identity:137/331 - (41%)
Similarity:205/331 - (61%) Gaps:23/331 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   446 SSGA-------PENAFAGEA----NCDRWEFPRYRLKFFNILGEGAFGQVWRCEATNINGNEGIT 499
            ||||       .||..:.:|    ...:|||||..|.....||||.||:|.:..|.::.|..|.|
Human   689 SSGARRPSLDSMENQVSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYT 753

  Fly   500 TVAVKTLKESATEVDRKDLLSELEVMKSLEPHINVVHLLGCCTDKDPTFVILEYVNRGKLQTYLR 564
            |||||.|||:|:..:.:|||||..|:|.:. |.:|:.|.|.|:...|..:|:||...|.|:.:||
Human   754 TVAVKMLKENASPSELRDLLSEFNVLKQVN-HPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLR 817

  Fly   565 SSR----------AERHYGN-THGKSNVLTSCDLTSFMYQVAKGMDYLTSRGIIHRDLAARNILI 618
            .||          ..|:..: .|.....||..||.||.:|:::||.||....::||||||||||:
Human   818 ESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILV 882

  Fly   619 TDDHTCKVADFGFARDVITSKIYERKSEGKLPIRWMATESLYDNIFSVKSDIWSFGILMWEIVTL 683
            .:....|::|||.:|||.....|.::|:|::|::|||.|||:|:|::.:||:||||:|:||||||
Human   883 AEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTL 947

  Fly   684 GSTPYPGISAADVMRKVRDGYRLEKPEHCRRELYNIMYYCWSHDPQERPLFAEIIQMLDKLLHTE 748
            |..|||||....:...::.|:|:|:|::|..|:|.:|..||..:|.:||:||:|.:.|:|::...
Human   948 GGNPYPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKR 1012

  Fly   749 MDYIEL 754
            .||::|
Human  1013 RDYLDL 1018

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad96CaNP_651349.1 Cadherin_repeat 65..164 CDD:206637
PTKc 474..742 CDD:270623 119/278 (43%)
RETNP_066124.1 RET_CLD1 29..154 CDD:465485
Cadherin-like region 1 (CLD1). /evidence=ECO:0000305|PubMed:11445581 29..153
Cadherin 172..261 CDD:394985
Cadherin-like region 3 (CLD3). /evidence=ECO:0000305|PubMed:11445581 265..379
RET_CLD3 265..379 CDD:465516
RET_CLD4 404..506 CDD:465517
Cadherin-like region 4 (CLD4). /evidence=ECO:0000305|PubMed:11445581 405..506
PTKc_RET 723..1012 CDD:173631 122/289 (42%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.