DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad96Ca and csf1rb

DIOPT Version :10

Sequence 1:NP_651349.1 Gene:Cad96Ca / 43026 FlyBaseID:FBgn0022800 Length:773 Species:Drosophila melanogaster
Sequence 2:XP_009293978.1 Gene:csf1rb / 568405 ZFINID:ZDB-GENE-091118-1 Length:961 Species:Danio rerio


Alignment Length:992 Identity:247/992 - (24%)
Similarity:370/992 - (37%) Gaps:332/992 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 SRIIHCRKQL-TSWRRRSLL---------LTIIVVTATVVSLISQEAEAHNQNAPPI-LYVR--E 61
            |.::||..|. ..|:.|..:         |.:...||...........:|......| |||:  :
Zfish    43 SFVLHCDGQAEIIWKTRRRIHQKNLSQNELVVQKATAEHTGTYRCSYRSHTDIYSEIHLYVKDPD 107

  Fly    62 RNWRISETE----KVGQ--IIDRVRAEDPDGDDLIFGIEPRFSLPGGENDASPPEKIPFQIDRET 120
            :.:..|:|.    |.|.  ::|.: ..:|.|.:        |||......|.||           
Zfish   108 KAFTTSQTRVIVIKEGSSFLLDCL-LTNPAGTE--------FSLQMTNGSAVPP----------- 152

  Fly   121 GVVTLNESLAGRAGQNFLIYITVTDGSYTAKNEVFINILGERENSSGYRPQTSISNVVHNISQFL 185
               .:|.:...|.|    |.|.....|||......:|:.|.:..|..::     ..|:....:  
Zfish   153 ---GMNYTADPRRG----ILIPNLQPSYTGDYVCMVNMSGVQWKSKVFQ-----ITVIKKAQE-- 203

  Fly   186 PRFDQLPGVQSIR---NGLPNSRPGGWYPPVPQNNIFGPPPFGNNY-------PPPPPNIPGVRG 240
            |....||.:|.:|   ..|.       .|...||:        |:|       |....|.     
Zfish   204 PPSVSLPALQYVRIVGESLQ-------IPCYIQNH--------NHYYNFTWSSPKKVLNF----- 248

  Fly   241 EQSGEEEQPDEEVTPTTPV----------------------RISST-----TPKSRTKLTPITAN 278
            |:..::::..|:|..|..:                      |.|||     ..|...:||||.::
Zfish   249 EREIKKKKKCEQVCATIYLTFQQLKMSDTENLTCTAMNEAGRNSSTAVLRVVEKPYLELTPILSS 313

  Fly   279 ----NSTRVE-------------SAIP----AETTTPSGGH---------HN------------- 300
                |.|.|.             .|.|    |:..|||..|         |:             
Zfish   314 EYKGNETNVVRMHGDQLELGVHIQAYPDVEWAKWKTPSSNHSYEETFHKIHDSDIYMATIRLKNV 378

  Fly   301 -----------------NSS---------SPITIFSLKSGTIPIVVTVGGFFVAIAVLLAYLCRR 339
                             |:|         .|.|:...::|.:....|  |:.:.......|...|
Zfish   379 GAQDYGDYIFSAGSTSVNASIIFTVHVYQKPTTVIKWENGVVSCAAT--GYPIPSIQWFQYEVNR 441

  Fly   340 RLCAISRT-----------LKKTKEKEELAKKSNQSQL------------SSTLTDDSRNSMVMQ 381
            .||:.:||           .:::.|.|.:..||...::            ::|..||.  .....
Zfish   442 ALCSDNRTSGVELMANQSISEQSGEYEPVLVKSALPEITANADLIFECVATNTAGDDC--DFYTF 504

  Fly   382 QWQGPVAFANRYVPWERDQQMGIATSQLSTGV-TNGGVSSPGVPSPGT----------------- 428
            .:.||                 ..||..||.| .:.|:|  |..|..|                 
Zfish   505 TFSGP-----------------RPTSVWSTSVLISLGLS--GALSVATLWMLILLYKNRKAQKYE 550

  Fly   429 -------GEPGSN---LGPGCLTGGAGSSGAPENAFAGEANCDRWEFPRYRLKFFNILGEGAFGQ 483
                   ...|:|   :.|         |..|.|        .:.||||.:||...:||.||||:
Zfish   551 IQWKIIEVNDGNNYTFIDP---------SQLPYN--------KKLEFPRNKLKLGQVLGAGAFGK 598

  Fly   484 VWRCEATNINGNEGITTVAVKTLKESATEVDRKDLLSELEVMKSLEPHINVVHLLGCCTDKDPTF 548
            |.:..|..:..:|.||.||||.||.||...:|:.|:|||:::..:.||.|:|:|||.||...|..
Zfish   599 VVQATAIGLVKDETITRVAVKMLKPSARFEEREALMSELKILNYIGPHENIVNLLGACTQGGPML 663

  Fly   549 VILEYVNRGKLQTYLRSSRAERHYGNTHG------KSNV-------------------------- 581
            :|.||...|.|..:|| .|.|.......|      .||:                          
Zfish   664 MITEYCCHGDLLNFLR-QRVETFVNTVLGVQSFAEDSNLYKNVTIQKQHPARNAYSGLDSFRDTP 727

  Fly   582 ----------------------LTSCDLTSFMYQVAKGMDYLTSRGIIHRDLAARNILITDDHTC 624
                                  |.:.||..|.||||:|||:|.|:..|||||||||:|:.|....
Zfish   728 SGQMPKEPFQESCNEELENMLSLDNMDLLMFSYQVAQGMDFLASKNCIHRDLAARNVLVADCRIV 792

  Fly   625 KVADFGFARDVITSKIYERKSEGKLPIRWMATESLYDNIFSVKSDIWSFGILMWEIVTLGSTPYP 689
            |:.|||.|||::....|..|...:||::||:.||:::.:::|:||:||:|:|:|||.:||.:|||
Zfish   793 KICDFGLARDIMNDTNYVVKGNARLPVKWMSPESIFECLYTVQSDVWSYGVLLWEIFSLGMSPYP 857

  Fly   690 GISA-ADVMRKVRDGYRLEKPEHCRRELYNIMYYCWSHDPQERPLFAEIIQMLDKLL------HT 747
            .::. |...:.::|||.:.:|:....|:|.||..||..:|..||.||:|.:::.|||      ..
Zfish   858 NVAIDAQFYKMIKDGYHMPQPDFAPHEMYTIMKMCWRQEPTTRPTFADITELIAKLLPMQTSEDN 922

  Fly   748 EMDYIELERFPDHNYYN 764
            |..|.||.|....|:.|
Zfish   923 ETMYPELRRHLMANHCN 939

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad96CaNP_651349.1 Cadherin_repeat 65..164 CDD:206637 23/104 (22%)
PTKc 474..742 CDD:270623 117/322 (36%)
csf1rbXP_009293978.1 Ig_3 22..87 CDD:464046 9/43 (21%)
IG_like 116..197 CDD:214653 22/112 (20%)
IG_like 210..299 CDD:214653 19/108 (18%)
Ig 327..405 CDD:472250 10/77 (13%)
Ig strand B 330..334 CDD:409353 0/3 (0%)
Ig strand C 344..348 CDD:409353 1/3 (33%)
Ig strand E 371..375 CDD:409353 0/3 (0%)
Ig strand F 385..390 CDD:409353 0/4 (0%)
Ig strand G 398..401 CDD:409353 1/2 (50%)
Ig 411..>467 CDD:472250 10/57 (18%)
Ig strand B 418..422 CDD:409256 1/3 (33%)
Ig strand C 431..435 CDD:409256 0/3 (0%)
Ig strand E 452..456 CDD:409256 0/3 (0%)
Protein Kinases, catalytic domain 548..914 CDD:473864 130/383 (34%)

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