DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cad96Ca and Flt1

DIOPT Version :9

Sequence 1:NP_651349.1 Gene:Cad96Ca / 43026 FlyBaseID:FBgn0022800 Length:773 Species:Drosophila melanogaster
Sequence 2:NP_062179.2 Gene:Flt1 / 54251 RGDID:2621 Length:1336 Species:Rattus norvegicus


Alignment Length:1103 Identity:262/1103 - (23%)
Similarity:401/1103 - (36%) Gaps:398/1103 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 HNHESR--IIHCR---------------------KQLTSWRRRSLLLTIIVVTATV--VSLISQE 45
            |..|.|  ||.||                     .|..:|..|.   ..|:..||.  :.|::.|
  Rat   147 HMTEGRELIIPCRVTSPNITVTLKKFPFDALTPDGQRIAWDSRR---GFIIANATYKEIGLLTCE 208

  Fly    46 AEAHNQNAPPILYVRERNWRISETEKVGQIIDRVRAEDPD------GDDLIFG----------IE 94
            |.. |.:.....|:..|        :...|:| |:...|.      |..|:..          ::
  Rat   209 ATV-NGHLYQTSYLTHR--------QTNTILD-VQISPPSPVRFLRGQTLVLNCTVTTDLNTRVQ 263

  Fly    95 PRFSLPGGEN---------DASPPE--------KIPFQIDRETGVVTLNESLAGRAGQNFLIYIT 142
            ..::.||...         |.|.|.        ||.....|:.|:.|.... :|.:.:.|...:.
  Rat   264 MSWNYPGKATKRASIRQRIDQSNPHSNVFHSVLKINNVESRDKGLYTCRVK-SGSSFRTFNTSVH 327

  Fly   143 VTDGSYTA----KNEVFINILGERENSSGYRPQTSISNVVHNISQFLPRFDQLPGVQSIRNGLPN 203
            |.:..:.:    |.:|...|.|:|.               |.:|..:..|.. |.|..:::|:|.
  Rat   328 VYEKGFISVKHRKQQVQETIAGKRS---------------HRLSMKVKAFPS-PEVVWLKDGVPA 376

  Fly   204 SRPGGWYP-----------------------PVPQNNIF------------------------GP 221
            :.....|.                       .:.|:.:|                        .|
  Rat   377 TEKSARYSVHGYSLIIKDVTAEDAGDYTILLGIKQSKLFRNLTATLIVNVKPQIYEKSVSSLPSP 441

  Fly   222 P--PFGNN-------YPPPPPNIPGV--------RGEQS----GEEEQPDEEVTPTTPVRISSTT 265
            |  |.|:.       |..|.|.|..:        ..|::    |.||....:.:.....||...|
  Rat   442 PLYPLGSRQVLTCTVYGIPQPTIKWLWHPCHYNHSKERNDFCFGSEESFILDSSSNIGNRIEGIT 506

  Fly   266 PKSRTKLTPITANNSTRVESAIPAETTTPSGGHHNNSSSPITIFSLKS----GTIP------IVV 320
                .::..|...|.| |.:.:.|::.||.            |:|.|:    ||:.      :..
  Rat   507 ----QRMMVIEGTNKT-VSTLVVADSRTPG------------IYSCKAFNKIGTVERDIRFYVTD 554

  Fly   321 TVGGFFVAI-------------AVLLAYLCRRRLCAI-----SRTLKKTKEKEELAKKSNQS--- 364
            ...||.|::             .|:..:|.|.....:     :||:..:..|:::|...:.|   
  Rat   555 VPNGFHVSLEKIPTEGEDLKLSCVVSKFLYRDITWILLRTVNNRTMHHSISKQKMATTQDYSITL 619

  Fly   365 ---------QLSSTLTDDSRN-----------SMVMQQWQGPVAFANRYVPWERDQQMGIATSQL 409
                     :.|.|....:||           .::::..:.|:...|.     .|.::.|     
  Rat   620 NLVIKNVSLEDSGTYACRARNIYTGEEILRKTEVLVRDLEAPLLLQNL-----SDHEVSI----- 674

  Fly   410 STGVTNGGVSSPGVPSPG----------TGEPGSNLGPGCLT---------------------GG 443
             :|.|.....:.|||:|.          ..|||..||||..|                     .|
  Rat   675 -SGSTTLDCQARGVPAPQITWFKNNHKIQQEPGIILGPGNSTLFIERVTEEDEGVYRCRATNQKG 738

  Fly   444 AGSSGA--------------------------------------------------------PEN 452
            ...|.|                                                        |:.
  Rat   739 VVESSAYLTVQGTSDKSNLELITLTCTCVAATLFWLLLTLFIRKLKRSSSEVKTDYLSIIMDPDE 803

  Fly   453 AFAGEANCDR-------WEFPRYRLKFFNILGEGAFGQVWRCEATNINGNEGITTVAVKTLKESA 510
            ....| .|:|       |||.|.|||....||.||||:|.:..|..|..:....|||||.|||.|
  Rat   804 VPLDE-QCERLPYDASKWEFARERLKLGKSLGRGAFGKVVQASAFGIKKSPTCRTVAVKMLKEGA 867

  Fly   511 TEVDRKDLLSELEVMKSLEPHINVVHLLGCCTDK-DPTFVILEYVNRGKLQTYLRSSR------- 567
            |..:.|.|::||:::..:..|:|||:|||.||.: .|..||:||...|.|..||:|.|       
  Rat   868 TASEYKALMTELKILTHIGHHLNVVNLLGACTKQGGPLMVIVEYCKYGNLSNYLKSKRDFFCLNK 932

  Fly   568 -AERHY-------------------------------GNTHGKS---------------NVLTSC 585
             |..|.                               |....||               ..||..
  Rat   933 DAALHMEPKKEKLEPDLEQDQKPRLDSVSSSESFTSSGFQEDKSVSDVEGGEDYSEISKQPLTME 997

  Fly   586 DLTSFMYQVAKGMDYLTSRGIIHRDLAARNILITDDHTCKVADFGFARDVITSKIYERKSEGKLP 650
            ||.|:.:|||:||::|:||..|||||||||||:::::..|:.|||.|||:..:..|.|:.:.:||
  Rat   998 DLISYSFQVARGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRRGDTRLP 1062

  Fly   651 IRWMATESLYDNIFSVKSDIWSFGILMWEIVTLGSTPYPGISA-ADVMRKVRDGYRLEKPEHCRR 714
            ::|||.||::|.::|.|||:||:|:|:|||.:||.:||||:.. .|...::::|.|:..||:...
  Rat  1063 LKWMAPESIFDKVYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLKEGMRMRTPEYATP 1127

  Fly   715 ELYNIMYYCWSHDPQERPLFAEIIQMLDKLLHTEM-----DYIELERFPDHN---YYNIVSLS 769
            |:|.||..||..||:|||.|||:::.|..||...:     |||.|......|   .|::.:.|
  Rat  1128 EIYQIMLDCWHKDPKERPRFAELVEKLGDLLQANVQQDGKDYIPLNAILTRNSGFTYSVPTFS 1190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad96CaNP_651349.1 Cadherin_repeat 65..164 CDD:206637 24/135 (18%)
STYKc 470..741 CDD:214568 127/326 (39%)
PTKc 474..742 CDD:270623 125/323 (39%)
Flt1NP_062179.2 IG_like 143..219 CDD:214653 17/75 (23%)
IG_like 237..328 CDD:214653 15/91 (16%)
Ig 245..327 CDD:299845 14/82 (17%)
Ig 353..424 CDD:299845 10/71 (14%)
IG_like 439..552 CDD:214653 27/129 (21%)
Ig 451..549 CDD:143165 23/114 (20%)
IG 568..640 CDD:214652 10/71 (14%)
IGc2 569..640 CDD:197706 10/70 (14%)
I-set 661..748 CDD:254352 21/97 (22%)
IGc2 676..738 CDD:197706 14/61 (23%)
PKc_like 819..1157 CDD:304357 133/337 (39%)
Pkinase_Tyr 827..1154 CDD:285015 127/326 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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