DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad96Ca and ret

DIOPT Version :10

Sequence 1:NP_651349.1 Gene:Cad96Ca / 43026 FlyBaseID:FBgn0022800 Length:773 Species:Drosophila melanogaster
Sequence 2:NP_858048.2 Gene:ret / 30512 ZFINID:ZDB-GENE-980526-307 Length:1106 Species:Danio rerio


Alignment Length:304 Identity:129/304 - (42%)
Similarity:198/304 - (65%) Gaps:12/304 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   462 RWEFPRYRLKFFNILGEGAFGQVWRCEATNINGNEGITTVAVKTLKESATEVDRKDLLSELEVMK 526
            :|||||..|.....||||.||:|.:..|..:.|..|.||||||.|||:|:..:.:|||||..::|
Zfish   708 KWEFPRKNLVLGKTLGEGEFGKVVKATAFRLKGKAGYTTVAVKMLKENASHSELRDLLSEFTLLK 772

  Fly   527 SLEPHINVVHLLGCCTDKDPTFVILEYVNRGKLQTYLRSSR--AERHYGNTHGKSN--------- 580
            .:. |.:|:.:.|.|:...|.::|:||...|.|:.:||.||  ...:.||...:::         
Zfish   773 QVN-HPHVIKMYGACSQDGPLYLIVEYAKYGSLRNFLRESRKVGPSYMGNDANRNSSYLENPDER 836

  Fly   581 VLTSCDLTSFMYQVAKGMDYLTSRGIIHRDLAARNILITDDHTCKVADFGFARDVITSKIYERKS 645
            .||..||.||.:|:::||.||....::||||||||:|:.:....|::|||.:|||.....|.::|
Zfish   837 ALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRS 901

  Fly   646 EGKLPIRWMATESLYDNIFSVKSDIWSFGILMWEIVTLGSTPYPGISAADVMRKVRDGYRLEKPE 710
            :|::|::|||.|||:|:|::.:||:||||:|:|||||||..|||||:...:...::.|||:||||
Zfish   902 KGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMEKPE 966

  Fly   711 HCRRELYNIMYYCWSHDPQERPLFAEIIQMLDKLLHTEMDYIEL 754
            :|..|:||:|..||..:..:||.|::|.:.|:|::....||::|
Zfish   967 NCTDEMYNLMLRCWKQESDKRPTFSDISKELEKMMVKSRDYLDL 1010

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad96CaNP_651349.1 Cadherin_repeat 65..164 CDD:206637
PTKc 474..742 CDD:270623 118/278 (42%)
retNP_858048.2 RET_CLD1 23..140 CDD:465485
CA 186..256 CDD:214520
RET_CLD3 251..364 CDD:465516
RET_CLD4 388..499 CDD:465517
PTKc_RET 715..1004 CDD:173631 121/289 (42%)
Blue background indicates that the domain is not in the aligned region.

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