DRSC/TRiP Functional Genomics Resources

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Protein Alignment vig2 and AT5G47210

DIOPT Version :9

Sequence 1:NP_733083.1 Gene:vig2 / 43016 FlyBaseID:FBgn0046214 Length:443 Species:Drosophila melanogaster
Sequence 2:NP_199532.1 Gene:AT5G47210 / 834767 AraportID:AT5G47210 Length:357 Species:Arabidopsis thaliana


Alignment Length:447 Identity:121/447 - (27%)
Similarity:174/447 - (38%) Gaps:137/447 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 NRYELLFMDDDDSSGLA---QPQIAAVVAAPKKPEPAKAP--KAPKSKSEKENKPVVAARKANAP 97
            |.::||..|.:|.|.||   ..::....||.:.|:.||.|  .||.|::.:|::        |||
plant     5 NPFDLLGDDAEDPSQLAVALSQKVEKAAAAVQPPKAAKFPTKPAPPSQAVRESR--------NAP 61

  Fly    98 VAKNASPVKGGKGPAGGDVGRPKNPTANGANNQGRFNNNQRYGNKESNGEFGNELPQRQFNNRD- 161
                    :||:|..||..|..:.....|.|...|  ||...||:  ||..|..  :|...:.| 
plant    62 --------QGGRGGTGGRGGFSRGRGNGGYNRDNR--NNDAPGNE--NGFSGGY--RRPSEDADG 112

  Fly   162 ---------------NRGPPR--VRTGE----KFGKREFDRQSGSDRTGVKSIDKREGGGAHNWG 205
                           ..||.|  |..||    :...|.:||.|   |||..:..||.|||..|||
plant   113 ASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHS---RTGHGTGMKRNGGGRGNWG 174

  Fly   206 SPKQDI----EDLKTTGETSPQAEKE-------DSANEQSADPAV--AAEEDESKQMTLDEWKAL 257
            :.:.||    |:..|..|.||.|||:       ::..|.:|:...  .|||.|:::|||:|::.:
plant   175 TTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEEAEAREMTLEEYEKI 239

  Fly   258 RDQRAKPNYNLRKAGEGAADNAEWKKMIVLSKKKESNSE--DELEYDPSLYPQRVGRLQRIVDIQ 320
            .:::.|. ....|..|...|...::.|..||.||.::.|  .:|..|.........:.::.:.| 
plant   240 LEEKKKA-LQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRKDATEKAKKSLSI- 302

  Fly   321 FNFNDGRKVGFRKGPRPGAGPREGGFRNDGPRGEGGYRNDGPRGEGGYRNDGPRGEGPRNEGPRG 385
               |:..|        |..|.|..| |..|.||.||   .|.|||||                  
plant   303 ---NEFLK--------PADGKRYNG-RGGGSRGRGG---RGGRGEGG------------------ 334

  Fly   386 EGYRNDGPRGEGFRGPRFNNGPSNGYENRQDNNRFGEKRRSAQKPLKVDDEAQFPTL 442
                                           |.|:.   :.|..| .:.|.||||:|
plant   335 -------------------------------NQRYA---KEAAAP-AIGDTAQFPSL 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vig2NP_733083.1 HABP4_PAI-RBP1 175..273 CDD:282609 37/110 (34%)
AT5G47210NP_199532.1 Stm1_N 1..61 CDD:401511 19/63 (30%)
HABP4_PAI-RBP1 147..257 CDD:398441 38/113 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 52 1.000 Domainoid score I4255
eggNOG 1 0.900 - - E1_KOG2945
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 101 1.000 Inparanoid score I2167
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm3391
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12299
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.920

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