DRSC/TRiP Functional Genomics Resources

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Protein Alignment vig2 and AT4G16830

DIOPT Version :9

Sequence 1:NP_733083.1 Gene:vig2 / 43016 FlyBaseID:FBgn0046214 Length:443 Species:Drosophila melanogaster
Sequence 2:NP_193416.1 Gene:AT4G16830 / 827389 AraportID:AT4G16830 Length:355 Species:Arabidopsis thaliana


Alignment Length:454 Identity:124/454 - (27%)
Similarity:172/454 - (37%) Gaps:155/454 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 NRYELLFMDDDDSSGLAQPQIAAVVAAPKKPE-------PAK-APKAPKSKSEKENKPVVAARKA 94
            |.::||..|.:|.|.||    .|:....|..:       ||| |||.|    .|...|..|.|:|
plant     5 NPFDLLDDDAEDPSQLA----VAIEKIDKSKKSGQVSSLPAKSAPKLP----SKPLPPAQAVREA 61

  Fly    95 --NAPVAKNASPVKGGKGPAGGDVGRPKNPTANGANNQGRFNNNQRYGNKESNGEFGNELPQRQF 157
              :||        :||.|..|.:.||       |..|:...||....|..:.:||  .::.:..:
plant    62 RSDAP--------RGGGGRGGFNRGR-------GGYNRDDGNNGYSGGYTKPSGE--GDVSKSSY 109

  Fly   158 NNRDNRGPPRVR-TGEKFG-------------------KREFDRQSGSDRTGVKSIDKREGGGAH 202
            ..|...|.||.. .||..|                   :|.|:|:||   ||..|..||:|.|..
plant   110 ERRGGGGAPRGSFRGEGGGPGGGRRGGFSNEGGDGERPRRAFERRSG---TGRGSDFKRDGSGRG 171

  Fly   203 NWGSPKQDI----------EDLKTTGETSPQAEKEDSANEQSADPAVAAEEDESKQMTLDEWKAL 257
            |||:|.::|          |..|..||.....:....||::  |..|..:|.|.|:|||||::.:
plant   172 NWGTPGEEIAAETEAVAGVETEKDVGEKPAVDDVAADANKE--DTVVEEKEPEDKEMTLDEYEKI 234

  Fly   258 RDQRAKPNYNLRKAGEGAADNAEWKKMIVLSKKKESNSE---------DELEYDPSLYPQRVGRL 313
            .:::.|...:| ...|...|...::.|..||.|| ||.|         |:.:.|      :..:.
plant   235 LEEKKKALQSL-TTSERKVDTKVFESMQQLSNKK-SNDEIFIKLGSDKDKRKDD------KEEKA 291

  Fly   314 QRIVDIQFNFNDGRKVGFRKGPRPGAGPREGGFRNDGPRGEGGYRNDGPRGEGGYRNDGPRGEGP 378
            ::.|.|    |:..|            |.|||....|  |.||      ||.||      ||.|.
plant   292 KKAVSI----NEFLK------------PAEGGNYYRG--GRGG------RGRGG------RGRGG 326

  Fly   379 RNEGPRGEGYRNDGPRGEGFRGPRFNNGPSNGYENRQDNNRFGEKRRSAQKPLKVDDEAQFPTL 442
            .:.|..| ||||:.             .|:.|                        |.||||:|
plant   327 VSSGESG-GYRNEA-------------APAIG------------------------DAAQFPSL 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vig2NP_733083.1 HABP4_PAI-RBP1 175..273 CDD:282609 36/126 (29%)
AT4G16830NP_193416.1 Stm1_N 1..66 CDD:370576 22/68 (32%)
HABP4_PAI-RBP1 147..252 CDD:368109 36/110 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 52 1.000 Domainoid score I4255
eggNOG 1 0.900 - - E1_KOG2945
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 101 1.000 Inparanoid score I2167
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm3391
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12299
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.920

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