DRSC/TRiP Functional Genomics Resources

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Protein Alignment vig2 and habp4

DIOPT Version :9

Sequence 1:NP_733083.1 Gene:vig2 / 43016 FlyBaseID:FBgn0046214 Length:443 Species:Drosophila melanogaster
Sequence 2:XP_012814355.1 Gene:habp4 / 448009 XenbaseID:XB-GENE-490018 Length:380 Species:Xenopus tropicalis


Alignment Length:389 Identity:110/389 - (28%)
Similarity:156/389 - (40%) Gaps:70/389 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 IMDNSG---NNRYELLFMDDDDSSGLAQPQIAAVVAAPKKPEPAKAPKAPKSKSEKENKPVVAAR 92
            :.||.|   .||:..|..|:.|...... |....:...||.|.|.|.|:...||.|:.    :.:
 Frog    18 MQDNFGCAVENRFNQLLDDESDPLDFLY-QSGVEITRRKKKEEAAAKKSANQKSGKKE----SQK 77

  Fly    93 KANAPVAKNASPVKGGKGPAGGDVGRPKNPTANGANNQG--------RFNNNQRYGNKESN---- 145
            :..|.:|..::.|:|.:  ..|....||| |.....|:.        |......:.....|    
 Frog    78 ERKAFLAGGSTEVQGTQ--QTGQKHAPKN-TVKATQNENVGSQVKVDRAERRTAFKEVRPNIMDR 139

  Fly   146 -GEFGNELP------QRQFNN----------RDNRGPPRVRTGEKF-GKREFDRQSGSDRTGVKS 192
             .|:..|.|      .:|..|          |...|.||....:.. |||||||.|||||..::.
 Frog   140 ATEYSIEKPMEIMDQDKQTRNYGAGRGGMRGRGRGGFPRNTENDNIRGKREFDRHSGSDRARIRP 204

  Fly   193 IDKREGGGAHNWGSPKQ---DIEDLKTTGETSPQAEKEDSANEQSADPAVAAEEDESKQMTLDEW 254
            .|||.|||..||||.|:   :||.:....:..| .|..::..|:.........|..|::|:||||
 Frog   205 EDKRGGGGPRNWGSIKEAFSEIEAVPVEEQVEP-TETTEATEEEHGKVPEEINEGFSQEMSLDEW 268

  Fly   255 KALRDQ-RAKPNYNLRKAGEGAADNAEWKKMIVLSKKKESN--SEDELEYDPSLYPQRVGRLQRI 316
            |:|:|| |||..:||||     .:.:...|.:|:.|.|..|  ||:|.||. ..:.:.|..:...
 Frog   269 KSLQDQNRAKTEFNLRK-----PETSVPSKAVVIHKSKYKNNISENEEEYH-YCFRKPVNDITAR 327

  Fly   317 VDIQFNFNDGRKVGFRKGPRPGAGPREGGFRNDGPRGEGGYRNDGPRGEGGYRNDGPRGEGPRN 380
            :||.|.          ...||..|      |..|.||........|.......:|.|..:.|.:
 Frog   328 LDINFG----------SLARPSRG------RGAGGRGRVRREEAFPHEVVNVLSDAPNPDDPED 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vig2NP_733083.1 HABP4_PAI-RBP1 175..273 CDD:282609 46/101 (46%)
habp4XP_012814355.1 IHABP4_N 18..139 CDD:374411 30/128 (23%)
HABP4_PAI-RBP1 187..287 CDD:368109 46/105 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 87 1.000 Domainoid score I7859
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 148 1.000 Inparanoid score I4292
OMA 1 1.010 - - QHG48663
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002116
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12299
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1570
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.070

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