DRSC/TRiP Functional Genomics Resources

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Protein Alignment vig2 and Serbp1

DIOPT Version :9

Sequence 1:NP_733083.1 Gene:vig2 / 43016 FlyBaseID:FBgn0046214 Length:443 Species:Drosophila melanogaster
Sequence 2:XP_006236678.1 Gene:Serbp1 / 246303 RGDID:619907 Length:407 Species:Rattus norvegicus


Alignment Length:403 Identity:123/403 - (30%)
Similarity:170/403 - (42%) Gaps:108/403 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 NRYELLFMDDDD----------------SSGLAQPQIAAVVAAPKKPEPAKAPKAPKSKSEKENK 86
            ||::.||.|:.|                ..|:..|...:...|..:.....|.|..:.:|:|:.|
  Rat    15 NRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRK 79

  Fly    87 -PV-----VAARK--ANAPVAKNASPVKGGKGPAGGDVGRPKNPTANGANN------QGRFNNNQ 137
             |:     ||.:|  ...|||.....::        .|||..:....|...      :.|....:
  Rat    80 NPLPPSVGVADKKEETQPPVALKKEGIR--------RVGRRPDQQLQGDGKIIDRRPERRPPRER 136

  Fly   138 RY----GNKESNGEFGNELP--QRQFNNRDNRGPPR------VRTGEKF---GKREFDRQSGSDR 187
            |:    ..|...|||..:.|  :|....|...|..|      :..|:.|   |||||||.|||||
  Rat   137 RFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDR 201

  Fly   188 ------TGVKSIDKREGGGAHNWG--------SPK----------QDIEDLKTT-----GETSPQ 223
                  :|:|..|||.|.|:||||        |||          .|:|....|     ||..|.
  Rat   202 SSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLEQSNVTEETPEGEEHPV 266

  Fly   224 AEKEDSANEQSADPAVAAEEDESKQMTLDEWKALRDQ-RAKPNYNLRKAGEGAADNAEWKKMIVL 287
            |:.|:..||     ....:|:..|:||||||||:::: |||..:|:||..|||  :.:|||..||
  Rat   267 ADTENKENE-----VEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA--DGQWKKGFVL 324

  Fly   288 --SKKKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFNDGRKVGFRKGPRPGAGPREGGFRNDG 350
              ||.:|:::||.:.......|......|    ::.||.|   :|     |||.|.|.|    .|
  Rat   325 HKSKSEEAHAEDSVMDHHFRKPANDITSQ----LEINFGD---LG-----RPGRGGRGG----RG 373

  Fly   351 PRGEGGYRNDGPR 363
            .||.||..|.|.|
  Rat   374 GRGRGGRPNRGSR 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vig2NP_733083.1 HABP4_PAI-RBP1 175..273 CDD:282609 52/127 (41%)
Serbp1XP_006236678.1 IHABP4_N 5..152 CDD:406560 30/144 (21%)
HABP4_PAI-RBP1 189..312 CDD:398441 52/127 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340878
Domainoid 1 1.000 80 1.000 Domainoid score I8380
eggNOG 1 0.900 - - E1_KOG2945
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I4446
OMA 1 1.010 - - QHG48663
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002116
OrthoInspector 1 1.000 - - mtm9023
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12299
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1570
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.860

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