DRSC/TRiP Functional Genomics Resources

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Protein Alignment fd96Cb and Foxd2

DIOPT Version :10

Sequence 1:NP_524496.1 Gene:fd96Cb / 43011 FlyBaseID:FBgn0004898 Length:271 Species:Drosophila melanogaster
Sequence 2:NP_001386132.1 Gene:Foxd2 / 313504 RGDID:1304642 Length:494 Species:Rattus norvegicus


Alignment Length:246 Identity:93/246 - (37%)
Similarity:116/246 - (47%) Gaps:56/246 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 KPPYSYISLTAMAIIHSPQRLLPLSEIYRFIMDQFPFYRKNTQKWQNSLRHNLSFNDCFIKVPRN 77
            |||||||:|..|||:.||::.|.||||..||..:||:||:....||||:|||||.||||:|:||.
  Rat   131 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPRE 195

  Fly    78 VTKAGKGSYWTLHPMAFDMFENGSLLRRRKRFRVKQL---------EKDISNWKLAAAANTEMVT 133
            ....|||:||||.|.:.|||:|||.|||||||:.:.|         ..::.....||||.     
  Rat   196 PGNPGKGNYWTLDPESADMFDNGSFLRRRKRFKRQPLPPPHPHPHPHPELLLRGGAAAAG----- 255

  Fly   134 HYLDDQLTQMAFA-------------------------DPARHGHVLANASAA--QMS--PYKAT 169
               |.......||                         .|..|.|..|.|:.|  |:|  |.:|.
  Rat   256 ---DPGAFLSGFAAYGAYGYGYGLALPAYGAPPPGPAPHPHPHPHAFAFAATAPCQLSVPPGRAA 317

  Fly   170 PPILPTTVTQLPARPKRAFTIESLMAPDPASTPNEGLVPMEYGSPDAVALE 220
            .|  |      |..|..:....:..||.||..|..|  |...|.|..:..|
  Rat   318 AP--P------PGPPTASVFASATSAPAPAPAPGSG--PSPAGLPAFLGAE 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fd96CbNP_524496.1 FH_FOX 1..110 CDD:469596 60/96 (63%)
Foxd2NP_001386132.1 FH_FOXD1_D2-like 131..229 CDD:410820 61/97 (63%)

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