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Protein Alignment fd96Cb and Foxg1

DIOPT Version :10

Sequence 1:	NP_524496.1	Gene:	fd96Cb / 43011	FlyBaseID:	FBgn0004898	Length:	271	Species:	Drosophila melanogaster
Sequence 2:	NP_036692.1	Gene:	Foxg1 / 24370	RGDID:	2619	Length:	480	Species:	Rattus norvegicus

Alignment Length:	261	Identity:	88/261 - (33%)
Similarity:	116/261 - (44%)	Gaps:	51/261 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly    12 QKPPYSYISLTAMAIIHSPQRLLPLSEIYRFIMDQFPFYRKNTQKWQNSLRHNLSFNDCFIKVPR 76
            :|||:||.:|..|||..||::.|.|:.||.|||..||:||:|.|.||||:|||||.|.||:||||
  Rat   171 EKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPR 235

  Fly    77 NVTKAGKGSYWTLHPMAFDMFENGSLLRRRKRFRVKQLEKDISNWKLAAAANTEMVTHYLDDQLT 141
            :....|||:||.|.|.:.|:|..|:..:.|:|       ...|..|||......:.:       |
  Rat   236 HYDDPGKGNYWMLDPSSDDVFIGGTTGKLRRR-------STTSRAKLAFKRGARLTS-------T 286

  Fly   142 QMAFADPARHGHVLANASAAQMSPYKAT--PPILPT-----TVTQLPARP---KRAFTIESLMAP 196
            .:.|.|       .|.:....|||:.:.  |....|     |.:..|:.|   ....|..||...
  Rat   287 GLTFMD-------RAGSLYWPMSPFLSLHHPRASSTLSYNGTTSAYPSHPMPYSSVLTQNSLGNN 344

  Fly   197 DPASTPN--------EGLVPMEYGSPDAVAL-EKPPFNL-----------PFNFNELAAQYQLYF 241
            ...||.|        .|.:|.......|.|| ...|..|           |.:.|.||.|...:|
  Rat   345 HSFSTANGLSVDRLVNGEIPYATHHLTAAALAASVPCGLSVPCSGTYSLNPCSVNLLAGQTSYFF 409

  Fly   242 P 242
            |
  Rat   410 P 410

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.