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Protein Alignment fd96Ca and Foxg1

DIOPT Version :9

Sequence 1:	NP_001287516.1	Gene:	fd96Ca / 43010	FlyBaseID:	FBgn0004897	Length:	372	Species:	Drosophila melanogaster
Sequence 2:	NP_036692.1	Gene:	Foxg1 / 24370	RGDID:	2619	Length:	480	Species:	Rattus norvegicus

Alignment Length:	334	Identity:	110/334 - (32%)
Similarity:	141/334 - (42%)	Gaps:	70/334 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly    12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYKFITDRFPYYRKNTQRWQNSLRHNLSFNDCFIKVPR 76
            :|||:||.:|..|||..||||.|.|:.||:||...|||||:|.|.||||:|||||.|.||:||||
  Rat   171 EKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPR 235

  Fly    77 RPDRPGKGAYWALHPQAFDMFENGSL--LRRR---KRFKL-HKNDKDLLNEELTALANLNRFFFT 135
            ..|.||||.||.|.|.:.|:|..|:.  ||||   .|.|| .|....|.:..||         |.
  Rat   236 HYDDPGKGNYWMLDPSSDDVFIGGTTGKLRRRSTTSRAKLAFKRGARLTSTGLT---------FM 291

  Fly   136 TRNGGSAAHMSP------------LDMN-NAAAMRLDPLPRSTAHMPNSLG--------PGVPLP 179
            .|.|.....|||            |..| ..:|....|:|.|:....||||        .|:.:.
  Rat   292 DRAGSLYWPMSPFLSLHHPRASSTLSYNGTTSAYPSHPMPYSSVLTQNSLGNNHSFSTANGLSVD 356

  Fly   180 HVMPASMSGADHTNLADMGLTNLPALTSSEIEGPLSLRPKRSFTI---ESLITPDKPEHPSEDED 241
            .::...:..|.|...|.....::|...|....|..||.|.....:   .|...|..| |||....
  Rat   357 RLVNGEIPYATHHLTAAALAASVPCGLSVPCSGTYSLNPCSVNLLAGQTSYFFPHVP-HPSMTSQ 420

  Fly   242 DEDDRVDIDVVECSGISRYPTTPAASEEYMSASRSSRTEDPLP--------PMHT--INAGAHVP 296
                                |:.:.|....|:|.|.:....||        |..|  ::.|....
  Rat   421 --------------------TSTSMSARAASSSTSPQAPSTLPCESLRPSLPSFTTGLSGGLSDY 465

  Fly   297 FLHYATGAN 305
            |.|...|::
  Rat   466 FTHQNQGSS 474

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.