DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shams and gxylt2

DIOPT Version :9

Sequence 1:NP_001097911.1 Gene:shams / 43008 FlyBaseID:FBgn0039273 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_001103670.1 Gene:gxylt2 / 567541 ZFINID:ZDB-GENE-070424-64 Length:441 Species:Danio rerio


Alignment Length:329 Identity:154/329 - (46%)
Similarity:211/329 - (64%) Gaps:25/329 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 QTGKP---------PLYIVVVSCGQRVQETLVMIKSAILFNYDEEYLKFVIFTEDGKGDEFREKL 97
            :.|:|         .:::.||:||.|:.|||.|:|||:||:..:  :||.||.|:...::|....
Zfish    94 EVGRPRSKVTLAEDVMHLAVVACGNRLDETLNMVKSALLFSMKK--IKFHIFAEEDLAEQFERGF 156

  Fly    98 TDWRDIKPFTFDFEILPLKFPSGNEVEWRNLFKPCAAQRLFLPSLLTHVDSLLYVDTDILFLSPI 162
            :.|.......|.:.|.|:.|..||..||:.|||||||||||||.:|..||||||||||:|||.|:
Zfish   157 SQWPQTLSSRFHYSIYPITFSVGNADEWKKLFKPCAAQRLFLPVILKDVDSLLYVDTDVLFLRPM 221

  Fly   163 SDIWRFFKKFNETQMSALTPEHENENIGWYNRFARHPFYGRLGVNSGVMLMNLTRMRE------- 220
            .|||:|.|.||.||::|:.||||...||||:||||||:||..|||||||||||||:|.       
Zfish   222 DDIWKFLKAFNSTQLAAMAPEHEIPKIGWYSRFARHPYYGVTGVNSGVMLMNLTRIRNTLFRNSM 286

  Fly   221 ----MKWEQHIVSIHKEYKLRIIWGDQDIINILFYYHPDKLYIMPCEYNYRPDHCMYMSICNMS- 280
                :.||..:..::::||..|.|||||::||:|:|:|:.|||.||::|||||||||.|.|..: 
Zfish   287 IASGLSWENLLHPLYQKYKNHITWGDQDLLNIIFHYNPECLYIFPCQWNYRPDHCMYGSNCKAAE 351

  Fly   281 QTGVKVIHGNRGYFHSDRQPLFKSIYGAMENYQLGSNANTEFLMPLHAALSIPSIKNSSCGKISN 345
            :.||.::|||||.:|.|:||.|:.:|.|:..|....|.......||.... :.:: |:.||:|..
Zfish   352 EEGVSILHGNRGVYHDDKQPAFRVVYDAIHEYPFEENLFQSLFYPLQTKF-LDTV-NTLCGRIPQ 414

  Fly   346 EVLK 349
            ..||
Zfish   415 VFLK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shamsNP_001097911.1 Glyco_tranf_GTA_type 48..343 CDD:299700 149/306 (49%)
RfaJ 64..>270 CDD:224359 113/216 (52%)
gxylt2NP_001103670.1 GT8_like_2 109..412 CDD:133052 149/306 (49%)
RfaJ 109..>340 CDD:224359 121/232 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 269 1.000 Domainoid score I1805
eggNOG 1 0.900 - - E1_KOG3765
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H16823
Inparanoid 1 1.050 321 1.000 Inparanoid score I2499
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D415297at33208
OrthoFinder 1 1.000 - - FOG0003370
OrthoInspector 1 1.000 - - otm24288
orthoMCL 1 0.900 - - OOG6_105081
Panther 1 1.100 - - O PTHR46012
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5350
SonicParanoid 1 1.000 - - X2261
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.860

Return to query results.
Submit another query.