DRSC/TRiP Functional Genomics Resources

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Protein Alignment shams and bgnt-1.1

DIOPT Version :9

Sequence 1:NP_001097911.1 Gene:shams / 43008 FlyBaseID:FBgn0039273 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_001023113.1 Gene:bgnt-1.1 / 3564773 WormBaseID:WBGene00008491 Length:412 Species:Caenorhabditis elegans


Alignment Length:130 Identity:27/130 - (20%)
Similarity:47/130 - (36%) Gaps:36/130 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 IKPFTFDFEILPLKFPSGNEVE-----------------WRNLFKPCA--AQRL----------F 138
            ||.|. .||.....||:|:.:|                 |:..:|..:  ||.:          :
 Worm   268 IKAFR-AFEFHHKYFPAGHTIESLWQWFRMSKNQTEAYAWKIDYKSSSWEAQLILHRKDPYNPEY 331

  Fly   139 LPSLLTHVDSLLY----VDTDILFLSPISDIWRFFKKFNETQMSALTPEHENE-NIGWYNRFARH 198
            :|:.:....||:|    .:......|.:.::.|..|. .||.:|:....|:.. ....|.||..:
 Worm   332 IPTRIRDQQSLVYELCRANYTFHLASHVFNVHRGVKT-KETNLSSAVLTHQKRLRTRSYKRFMHY 395

  Fly   199  198
             Worm   396  395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shamsNP_001097911.1 Glyco_tranf_GTA_type 48..343 CDD:299700 27/130 (21%)
RfaJ 64..>270 CDD:224359 27/130 (21%)
bgnt-1.1NP_001023113.1 Glyco_transf_49 85..400 CDD:290607 27/130 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3765
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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