DRSC/TRiP Functional Genomics Resources

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Protein Alignment shams and Gxylt1

DIOPT Version :9

Sequence 1:NP_001097911.1 Gene:shams / 43008 FlyBaseID:FBgn0039273 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_001333714.1 Gene:Gxylt1 / 223827 MGIID:2684933 Length:435 Species:Mus musculus


Alignment Length:366 Identity:160/366 - (43%)
Similarity:233/366 - (63%) Gaps:35/366 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LSYFVHQRPSWVTENKGKMLGYN---------ELQTGKP--PLYIVVVSCGQRVQETLVMIKSAI 70
            |||:   .|.|:..:  .:.|.|         :::| :|  .:::.||:||:|::||:.|:|||:
Mouse    75 LSYW---NPYWMLPS--DVCGMNCFWEAAFRYDMKT-RPDEKMHLAVVACGERLEETVTMLKSAL 133

  Fly    71 LFNYDEEYLKFVIFTEDGKGDEFREKLTDWRDIKPFTFDFEILPLKFPSGNEVEWRNLFKPCAAQ 135
            :|:.  :.|...||.||...|.|:::|..|..::  .||:.:.|:.||..:..:|:.||||||:|
Mouse   134 IFSI--KPLHVHIFAEDQLHDSFKDRLASWSFLR--RFDYSLYPITFPGDSAADWKKLFKPCASQ 194

  Fly   136 RLFLPSLLTHVDSLLYVDTDILFLSPISDIWRFFKKFNETQMSALTPEHENENIGWYNRFARHPF 200
            |||||.:|..||||||||||||||.|:.|||...||||.||::|:.||||...|||||||||||:
Mouse   195 RLFLPLILKEVDSLLYVDTDILFLRPVDDIWSLLKKFNSTQIAAMAPEHEEPRIGWYNRFARHPY 259

  Fly   201 YGRLGVNSGVMLMNLTRMR-----------EMKWEQHIVSIHKEYKLRIIWGDQDIINILFYYHP 254
            |||.||||||||||:||||           .::|...::.:.|:|||.|.|||||::||:|.::|
Mouse   260 YGRTGVNSGVMLMNMTRMRRKYFKNDMTTARLQWGDILMPLLKKYKLNITWGDQDLLNIVFSHNP 324

  Fly   255 DKLYIMPCEYNYRPDHCMYMSIC-NMSQTGVKVIHGNRGYFHSDRQPLFKSIYGAMENYQLGSNA 318
            :.|::.||::|||||||:|.|.| ...:.||.::|||||.:|.|:||.|:::|.|:.|..|..::
Mouse   325 ESLFVFPCQWNYRPDHCIYGSNCREAEEEGVFILHGNRGVYHDDKQPAFRAVYEALRNCSLEDDS 389

  Fly   319 NTEFLMPLHAALSIPSIKNSSCGKISNEVLKVANAVVTKRY 359
            ....|.||.  |.:....::.|||.....:|.....:..||
Mouse   390 VRSLLKPLE--LELQKTVHTYCGKTYKIFIKQLTKSIRNRY 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shamsNP_001097911.1 Glyco_tranf_GTA_type 48..343 CDD:299700 147/306 (48%)
RfaJ 64..>270 CDD:224359 112/216 (52%)
Gxylt1NP_001333714.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167836170
Domainoid 1 1.000 47 1.000 Domainoid score I11958
eggNOG 1 0.900 - - E1_KOG3765
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 335 1.000 Inparanoid score I2392
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D415297at33208
OrthoFinder 1 1.000 - - FOG0003370
OrthoInspector 1 1.000 - - otm43540
orthoMCL 1 0.900 - - OOG6_105081
Panther 1 1.100 - - LDO PTHR46012
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5350
SonicParanoid 1 1.000 - - X2261
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.790

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