DRSC/TRiP Functional Genomics Resources

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Protein Alignment shams and bgnt-1.7

DIOPT Version :9

Sequence 1:NP_001097911.1 Gene:shams / 43008 FlyBaseID:FBgn0039273 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_001364608.1 Gene:bgnt-1.7 / 188531 WormBaseID:WBGene00011779 Length:399 Species:Caenorhabditis elegans


Alignment Length:255 Identity:54/255 - (21%)
Similarity:85/255 - (33%) Gaps:96/255 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 YDEEYLKFVIFTEDGKGDEFREKLTDWRDIKPFTFDFEILPLKFPSGNEVEWRNLFKPCAAQRLF 138
            |...|...|.|.:  |..|..|::.|         .|:|.|:..       .||:.:..|..   
 Worm   152 YTSGYKDCVTFFQ--KNTELLEEMED---------PFQIYPINL-------MRNIARRGAKS--- 195

  Fly   139 LPSLLTHVDSLLYVDTDIL-------FLSPISD------------IWRFFKKFNETQMSALTPEH 184
                    |..|.||||::       .:.|:::            :.||  :.|||::.....|.
 Worm   196 --------DLHLIVDTDMVMSTNFAKMVKPVANRMIDGMNKQVLVVRRF--ETNETELPLNLDEL 250

  Fly   185 E----NENIGWYNRFARHPFYGRLGVNSGVMLMNLTRMRE--------MKWEQHIVSIHKEYKLR 237
            |    |||...::    |.|:     ..|..:.||:...|        ..||  |.....:::::
 Worm   251 EQGLLNENTFEFH----HSFF-----FVGHQIPNLSEWFENSYASEETTAWE--IPYTGSDWEVQ 304

  Fly   238 IIWGDQDIINILFYYHPDKLYIMP------CEYNY---------------RPDHCMYMSI 276
            ||....|..||  .|.|.::..|.      |..||               :.|..||..:
 Worm   305 IILHRNDPYNI--EYFPSRVRDMQSLIYKLCRANYTFNLLSHVFNVHKGIKEDDTMYSKV 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shamsNP_001097911.1 Glyco_tranf_GTA_type 48..343 CDD:299700 54/255 (21%)
RfaJ 64..>270 CDD:224359 51/247 (21%)
bgnt-1.7NP_001364608.1 Glyco_transf_49 76..387 CDD:404735 54/255 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158805
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3765
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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