DRSC/TRiP Functional Genomics Resources

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Protein Alignment shams and lge-1

DIOPT Version :9

Sequence 1:NP_001097911.1 Gene:shams / 43008 FlyBaseID:FBgn0039273 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_509833.3 Gene:lge-1 / 187206 WormBaseID:WBGene00010716 Length:631 Species:Caenorhabditis elegans


Alignment Length:327 Identity:73/327 - (22%)
Similarity:136/327 - (41%) Gaps:62/327 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 LFNYDEEYLKFVIFTEDGKGDEFREKLTDWRDIKPFTF-----DFEILPLKFPSGNEVEWRNLFK 130
            :..|.:.:.:..:.|::....:..|.:|.|.......|     :||......|:.:..::..|.|
 Worm    65 VLKYSDHFFRLHLITDENHRSDIHELMTSWNISNCEWFFHNLTEFEKRVAWIPNSHYSKYYGLSK 129

  Fly   131 PCAAQRLFLPSLL-THVDSLLYVDTDILFLSPISDIWRFFKKFNETQMSALTPEHENENIG-WY- 192
                  |.:|.:: ..:..::::|.||:|.:.|.|:|:.|:.||.:|:..:.     ||:. || 
 Worm   130 ------LLIPEIIGNDIGKIMFMDVDIIFQTNIFDLWKQFRNFNNSQVFGMV-----ENLSDWYL 183

  Fly   193 NRFARH---PFYGRLGVNSGVMLMNLTRMREMKWEQHIVSIHKEYKLRI----IWGDQDIINILF 250
            |:..:.   |..|| |.|:|:::.:|.::|:..|......:..:| |||    ...||||.|...
 Worm   184 NKDGKKSVWPALGR-GFNTGIIMFDLDKLRKNGWASKWRVVANKY-LRIHGKTAMSDQDIFNAYI 246

  Fly   251 YYHPDKLYIMPCEYNYR-------PDHCMYMSICNMSQTGVKVIHGNRGYFH-----------SD 297
            :.:|.::..:||.|||:       .:.|....:.....:..|.:..|..:|.           ||
 Worm   247 HDYPTEIIQIPCAYNYQLGALTKSKELCPETPLALHFNSQNKTVGKNYAFFDKIRKAFDEMDGSD 311

  Fly   298 ---RQPLFKS--------IYGAMENYQLGSNANTEFLMPLHAALSIPSIKNSSCGKISNEVLKVA 351
               |:..||.        .|..::|:::..||......|....:.....|:.     .|..|:.|
 Worm   312 LKRRRRSFKGNNQKDICHEYLPLDNFRIIPNAIGRMTKPAELCMVTQFSKDR-----LNHFLESA 371

  Fly   352 NA 353
            ||
 Worm   372 NA 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shamsNP_001097911.1 Glyco_tranf_GTA_type 48..343 CDD:299700 68/315 (22%)
RfaJ 64..>270 CDD:224359 53/220 (24%)
lge-1NP_509833.3 GT8_LARGE_C 42..317 CDD:133053 60/264 (23%)
RfaJ 62..>288 CDD:224359 54/235 (23%)
Glyco_transf_49 354..603 CDD:290607 6/25 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 75 1.000 Domainoid score I5943
eggNOG 1 0.900 - - E1_KOG3765
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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