DRSC/TRiP Functional Genomics Resources

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Protein Alignment shams and bgnt-1.6

DIOPT Version :9

Sequence 1:NP_001097911.1 Gene:shams / 43008 FlyBaseID:FBgn0039273 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_493107.1 Gene:bgnt-1.6 / 186417 WormBaseID:WBGene00010167 Length:388 Species:Caenorhabditis elegans


Alignment Length:239 Identity:42/239 - (17%)
Similarity:86/239 - (35%) Gaps:67/239 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 LFLSPISDIWRFFKKFNETQMSALTPE-HENENIGWYN------RFAR---HPFYGRLGVNSGVM 211
            |..|.:..:| |.||::: .:|.::.| :|||....||      :|..   .|.  .|.::....
 Worm    15 LLFSILLCLW-FLKKYSQ-DLSRISIELYENEFCIGYNFLEATEKFREDGLEPV--TLAIHGTSD 75

  Fly   212 LMNLTRMREMKWEQHI-----VSIHKEYKLRII---------WGDQDIINILFYYHPDKLYIMPC 262
            ::.:...:...|:..|     |..|.:..|..:         :|::..::.:|...|.:   |.|
 Worm    76 VLEVVEKKPSNWDGPISFGMFVDYHSQKALEYVAMLHQCDKEFGEKVTVHYVFRTSPSQ---MDC 137

  Fly   263 EYNYRPDHCMYMSICNMSQTGVKVIHGNRGYFHSDRQPLFKSIYGAMENYQL---------GSNA 318
            .. ..||                 :..|...|..:|:.|.|.|....:.|.:         |:.:
 Worm   138 PV-ITPD-----------------VSVNCDEFRRNRKQLLKEITSPFQIYPINLMRNVARRGATS 184

  Fly   319 NTEFLMPLHAALSIPSIKNSSCGKISNEVLKVANAVVTKRYREV 362
            :...::.....:|         ...:.:|..:||.::..:.|:|
 Worm   185 DLHLIVDADMTMS---------SDFARKVKPIANRIIDGKQRQV 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shamsNP_001097911.1 Glyco_tranf_GTA_type 48..343 CDD:299700 37/218 (17%)
RfaJ 64..>270 CDD:224359 27/136 (20%)
bgnt-1.6NP_493107.1 Glyco_transf_49 65..376 CDD:290607 28/187 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158806
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3765
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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