DRSC/TRiP Functional Genomics Resources

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Protein Alignment shams and bgnt-1.6

DIOPT Version :10

Sequence 1:NP_001097911.1 Gene:shams / 43008 FlyBaseID:FBgn0039273 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_493107.1 Gene:bgnt-1.6 / 186417 WormBaseID:WBGene00010167 Length:388 Species:Caenorhabditis elegans


Alignment Length:239 Identity:42/239 - (17%)
Similarity:86/239 - (35%) Gaps:67/239 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 LFLSPISDIWRFFKKFNETQMSALTPE-HENENIGWYN------RFAR---HPFYGRLGVNSGVM 211
            |..|.:..:| |.||::: .:|.::.| :|||....||      :|..   .|.  .|.::....
 Worm    15 LLFSILLCLW-FLKKYSQ-DLSRISIELYENEFCIGYNFLEATEKFREDGLEPV--TLAIHGTSD 75

  Fly   212 LMNLTRMREMKWEQHI-----VSIHKEYKLRII---------WGDQDIINILFYYHPDKLYIMPC 262
            ::.:...:...|:..|     |..|.:..|..:         :|::..::.:|...|.:   |.|
 Worm    76 VLEVVEKKPSNWDGPISFGMFVDYHSQKALEYVAMLHQCDKEFGEKVTVHYVFRTSPSQ---MDC 137

  Fly   263 EYNYRPDHCMYMSICNMSQTGVKVIHGNRGYFHSDRQPLFKSIYGAMENYQL---------GSNA 318
            .. ..||                 :..|...|..:|:.|.|.|....:.|.:         |:.:
 Worm   138 PV-ITPD-----------------VSVNCDEFRRNRKQLLKEITSPFQIYPINLMRNVARRGATS 184

  Fly   319 NTEFLMPLHAALSIPSIKNSSCGKISNEVLKVANAVVTKRYREV 362
            :...::.....:|         ...:.:|..:||.::..:.|:|
 Worm   185 DLHLIVDADMTMS---------SDFARKVKPIANRIIDGKQRQV 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shamsNP_001097911.1 Glyco_tranf_GTA_type 48..343 CDD:472172 37/218 (17%)
bgnt-1.6NP_493107.1 Glyco_transf_49 65..377 CDD:464027 28/187 (15%)

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