DRSC/TRiP Functional Genomics Resources

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Protein Alignment shams and bgnt-1.8

DIOPT Version :9

Sequence 1:NP_001097911.1 Gene:shams / 43008 FlyBaseID:FBgn0039273 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_493157.2 Gene:bgnt-1.8 / 183769 WormBaseID:WBGene00008290 Length:396 Species:Caenorhabditis elegans


Alignment Length:237 Identity:48/237 - (20%)
Similarity:76/237 - (32%) Gaps:88/237 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 KGDEFREKLTDWRDIKPFTFDFEILPLKFPSGNEVEWRNLFKPCAAQRLFLPSLLTHVDSLLYVD 153
            |..:..|::.|         .|:|.|:..       .||:.:..|..           |..|.:|
 Worm   162 KSKQLLEEIED---------SFQIYPINL-------MRNIARRGAKS-----------DLHLIID 199

  Fly   154 TDIL-------FLSPISD------------IWRFFKKFNETQMSALTPEHENENIGWYNRFA-RH 198
            ||::       .:.||::            :.||....||..||....|...||   :..|. .|
 Worm   200 TDMMMSTNFAKMVKPIANRMIDGKNKQVLVVRRFETNENELPMSFGDLEEGIEN---HKTFQFHH 261

  Fly   199 PFYGRLGVNSGVMLMNLTRMRE--------MKWEQHIVSIHKEYKLRIIWGDQDIINILFYYHPD 255
            .|:     ..|..:.||....|        :.||  |.....:::::||....|..|:  .|.|.
 Worm   262 KFF-----FVGHQIPNLMEWFERSHASNDVVAWE--IPYTGNDWEVQIILHRNDPYNV--EYFPS 317

  Fly   256 KLYIMP------CEYNY---------------RPDHCMYMSI 276
            ::..|.      |..||               :.|..||..:
 Worm   318 RVKDMQSLIYKLCRANYTFNLLSHVFNVHKGIKEDDTMYSKV 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shamsNP_001097911.1 Glyco_tranf_GTA_type 48..343 CDD:299700 48/237 (20%)
RfaJ 64..>270 CDD:224359 45/229 (20%)
bgnt-1.8NP_493157.2 Glyco_transf_49 73..384 CDD:290607 48/237 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158804
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3765
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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