DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shams and gxylt2

DIOPT Version :10

Sequence 1:NP_001097911.1 Gene:shams / 43008 FlyBaseID:FBgn0039273 Length:362 Species:Drosophila melanogaster
Sequence 2:XP_002938793.1 Gene:gxylt2 / 100486141 XenbaseID:XB-GENE-5889629 Length:422 Species:Xenopus tropicalis


Alignment Length:407 Identity:170/407 - (41%)
Similarity:235/407 - (57%) Gaps:62/407 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLCLIALAILSYFVH--------QRPSWVTENKGK----MLGYNEL------------------- 41
            :|||..|.:|   :|        |.|...|..:|:    ..||...                   
 Frog    11 VLCLTGLLLL---LHRHLGNAQLQPPPGSTSGRGRTPIATPGYFRAAEDPMSRRDVPGGKKKPHL 72

  Fly    42 -------QTGKPP-----LYIVVVSCGQRVQETLVMIKSAILFNYDEEYLKFVIFTEDGKGDEFR 94
                   |..|||     :::.||:||.||:||:.|:|||:||::.:  :||.||.||....:|.
 Frog    73 AKVRAPEQKPKPPMPEEWMHLAVVACGDRVEETVTMLKSAVLFSFKK--IKFHIFAEDSLKPDFE 135

  Fly    95 EKLTDWRDIKPFTFDFEILPLKFPSGNEVEWRNLFKPCAAQRLFLPSLLTHVDSLLYVDTDILFL 159
            .||..|........:::|.|:.||.||..||:.|||||||||||||.||..||||||||||:|||
 Frog   136 IKLEKWPQQISRKVEYKIYPITFPVGNPQEWKKLFKPCAAQRLFLPMLLQDVDSLLYVDTDVLFL 200

  Fly   160 SPISDIWRFFKKFNETQMSALTPEHENENIGWYNRFARHPFYGRLGVNSGVMLMNLTRMRE---- 220
            .|:..||.|.::||:||::|:.||||...||||:|||||||||..|||||||||||||:|.    
 Frog   201 RPLDHIWAFLRRFNDTQLAAMAPEHEISKIGWYSRFARHPFYGTTGVNSGVMLMNLTRIRNQQFK 265

  Fly   221 -------MKWEQHIVSIHKEYKLRIIWGDQDIINILFYYHPDKLYIMPCEYNYRPDHCMYMSICN 278
                   :.||:.:..::::||..|.|||||::||:||::|:.||:.||.:|||||||||.|.|.
 Frog   266 NNMIPAGLTWEEMLHPLYQKYKNYITWGDQDLLNIIFYFNPEMLYVFPCHWNYRPDHCMYGSNCK 330

  Fly   279 MS-QTGVKVIHGNRGYFHSDRQPLFKSIYGAMENYQLGSNANTEFLMPLHAALSIPSIKNSSCGK 342
            .: :.||.::|||||.:|.::||.||:.|..:.:|....|.......||.:.. :.|: ::.||:
 Frog   331 AAEEEGVSILHGNRGVYHDEKQPAFKAFYEVIRDYPFDDNLFQSMYFPLQSKF-LESV-HTLCGR 393

  Fly   343 ISNEVLKVANAVVTKRY 359
            |....||.....:...|
 Frog   394 IPQVFLKQIEKTMKMMY 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shamsNP_001097911.1 Glyco_tranf_GTA_type 48..343 CDD:472172 150/306 (49%)
gxylt2XP_002938793.1 GT8_like_2 91..394 CDD:133052 150/306 (49%)

Return to query results.
Submit another query.