DRSC/TRiP Functional Genomics Resources

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Protein Alignment veli and lin-7

DIOPT Version :9

Sequence 1:NP_733076.2 Gene:veli / 43003 FlyBaseID:FBgn0039269 Length:246 Species:Drosophila melanogaster
Sequence 2:NP_001122664.2 Gene:lin-7 / 175089 WormBaseID:WBGene00002996 Length:209 Species:Caenorhabditis elegans


Alignment Length:238 Identity:131/238 - (55%)
Similarity:162/238 - (68%) Gaps:51/238 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DNAEPLTLSRDVKRSIELLEKLQASGDFPTTKLAALQKVLNSDFMTSVREVYEHVYETVDIQGSH 67
            ||.:...|.|||:|.:||:|.:|.:|:....|||:||:||.|:|..:||||||.|||::|...:.
 Worm     2 DNPDGPNLERDVQRILELMEHVQKTGEVNNAKLASLQQVLQSEFFGAVREVYETVYESIDADTTP 66

  Fly    68 DVRASATAKATVAAFAASEGHAHPRVVELPKTEEGKTRPYELRIEGIPLYHKTNTLIVKVYRPRI 132
            :::|:||||||||||||:|||||||:||||||::                               
 Worm    67 EIKAAATAKATVAAFAAAEGHAHPRIVELPKTDQ------------------------------- 100

  Fly   133 YVSIIHLIWKALSIFNFCFSGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 197
                                |||||||||||||||||||||||||||||||||||||||::||||
 Worm   101 --------------------GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLIAVNGV 145

  Fly   198 SVEGENHEKAVELLKQAVGSVKLVVRYTPKVLEEMEMRFDKQR 240
            :||.|.|||||:|||.||||||||:||.||:|:|||.||::||
 Worm   146 NVEAECHEKAVDLLKSAVGSVKLVIRYMPKLLDEMERRFERQR 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
veliNP_733076.2 L27 14..66 CDD:280918 26/51 (51%)
PDZ_signaling 153..223 CDD:238492 62/69 (90%)
lin-7NP_001122664.2 L27 13..61 CDD:280918 25/47 (53%)
PDZ_signaling 90..171 CDD:238492 70/131 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167691
Domainoid 1 1.000 130 1.000 Domainoid score I3253
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H22648
Inparanoid 1 1.050 245 1.000 Inparanoid score I2063
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48622
OrthoDB 1 1.010 - - D1335138at2759
OrthoFinder 1 1.000 - - FOG0001780
OrthoInspector 1 1.000 - - oto19321
orthoMCL 1 0.900 - - OOG6_105974
Panther 1 1.100 - - LDO PTHR14063
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2983
SonicParanoid 1 1.000 - - X1136
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.940

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