DRSC/TRiP Functional Genomics Resources

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Protein Alignment veli and lin7a

DIOPT Version :10

Sequence 1:NP_733076.2 Gene:veli / 43003 FlyBaseID:FBgn0039269 Length:246 Species:Drosophila melanogaster
Sequence 2:XP_017947422.1 Gene:lin7a / 100144984 XenbaseID:XB-GENE-998220 Length:256 Species:Xenopus tropicalis


Alignment Length:112 Identity:23/112 - (20%)
Similarity:44/112 - (39%) Gaps:19/112 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 VVNSAYEVIR--------LKGYTSWAIGLSVASLASAILRNTYNVHAVSTLVKGEHGIDDEVYLS 290
            |:.|.:.:|.        ||...:|....|:.:|..:|:..|.....:...:.| .|...:.:.|
 Frog     3 VIFSNFSIITTALLFRIVLKRRLNWIQWASLLTLFLSIVALTAGTKTLQHNLAG-RGFHHDAFFS 66

  Fly   291 LP---CVLGRNGVSH----VVKQILTPEETKKLQASATLMAQVQSGI 330
             |   |:|.|:....    ..|:...||  .|...:|.:.:.::.|:
 Frog    67 -PSNSCLLFRSECPRKDNCTAKEWTFPE--AKWNTTARVFSHIRLGM 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
veliNP_733076.2 L27 14..66 CDD:460717
PDZ_Lin-7-like 90..226 CDD:467258
lin7aXP_017947422.1 L27 52..105 CDD:197794 12/56 (21%)
PDZ_Lin-7-like 127..212 CDD:467258
Blue background indicates that the domain is not in the aligned region.

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