DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11790 and tmx4

DIOPT Version :9

Sequence 1:NP_651326.1 Gene:CG11790 / 42999 FlyBaseID:FBgn0039265 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_001034826.1 Gene:tmx4 / 496882 XenbaseID:XB-GENE-992676 Length:366 Species:Xenopus tropicalis


Alignment Length:187 Identity:43/187 - (22%)
Similarity:71/187 - (37%) Gaps:48/187 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 EPAVKELSDDNFEHLTQASSGATTGDWFIFFSSAECTVCQRLYAVWES-------VGGKLKRKLN 180
            |..|:.::..|:..|.:       |:|.|.|.:..|..||::.:.|||       :|.|: .|::
 Frog    44 ESGVRAVTSTNWSALLE-------GEWMIKFYAPWCPACQQIQSAWESFAERSHALGVKV-GKVD 100

  Fly   181 IARMNSLESGISTATRLGVLEAPAFIFLRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAI 245
            :..    |.|:|  .|..|...|.....:.|...:|...:...:.....:||.:....|......
 Frog   101 VTE----EPGLS--GRFFVTTLPTIFHAKDGVFRRYHGSRMVEDLQTFISEKKWEVIEPVAGWRS 159

  Fly   246 PSAV-------------------NEFLGPLQSYFAAENITSLATLSIFALVALLFVG 283
            ||::                   |.|.|||       .|.:..:..|| :||.||:|
 Frog   160 PSSILMSGMASLFQLSGWMRQLHNYFTGPL-------GIPAWGSYVIF-VVATLFIG 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11790NP_651326.1 PDI_a_family 127..230 CDD:239259 23/109 (21%)
tmx4NP_001034826.1 PDI_a_TMX 45..145 CDD:239292 24/113 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1481386at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.