DRSC/TRiP Functional Genomics Resources

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Protein Alignment bai and Tmed10

DIOPT Version :9

Sequence 1:NP_651323.3 Gene:bai / 42996 FlyBaseID:FBgn0045866 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_445919.1 Gene:Tmed10 / 84599 RGDID:620970 Length:219 Species:Rattus norvegicus


Alignment Length:199 Identity:111/199 - (55%)
Similarity:137/199 - (68%) Gaps:24/199 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 VMFKLSPNTQKCLKEDIQANQLVMGEFEVSDVPG---------QIIDYIARDTKGHILSQKEHIT 76
            :.|.|..|::|||:|:|..:.||.|.:|::|..|         :|     .|:.||||..||..|
  Rat    32 ISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTHLKI-----TDSAGHILYAKEDAT 91

  Fly    77 KGKFSFMSEVYDTYEICFISK----VPAHQRGVIQEVSLLTKKGVETKSYEGIGEASKLKPLEVD 137
            ||||:|.:|.||.:|:||.||    :|.      |.|.|..|.|||.|:||.|.:..|||||||:
  Rat    92 KGKFAFTTEDYDMFEVCFESKGTGRIPD------QLVILDMKHGVEAKNYEEIAKVEKLKPLEVE 150

  Fly   138 LKRLEDLSDSIVRDFVLMRKREEEMRDTNEKTNSRVLFFSIFSMCCLLGLATWQVLYLRRYFKAK 202
            |:||||||:|||.||..|:|||||||||||.||:|||:||||||.||:|||||||.||||:||||
  Rat   151 LRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAK 215

  Fly   203 KLIE 206
            ||||
  Rat   216 KLIE 219

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
baiNP_651323.3 EMP24_GP25L 20..200 CDD:279450 103/191 (54%)
Tmed10NP_445919.1 Required for interaction with STX17. /evidence=ECO:0000250 1..142 48/120 (40%)
EMP24_GP25L 31..213 CDD:395878 103/191 (54%)
Required for TMED10 and TMED2 cis-Golgi network localization. /evidence=ECO:0000250 147..178 23/30 (77%)
Interaction with COPG1. /evidence=ECO:0000250 204..219 12/14 (86%)
Interaction with ARF1 and IL1B. /evidence=ECO:0000250|UniProtKB:P49755 207..219 10/11 (91%)
COPI vesicle coat-binding. /evidence=ECO:0000255 211..219 6/7 (86%)