DRSC/TRiP Functional Genomics Resources

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Protein Alignment bai and Tmed11

DIOPT Version :9

Sequence 1:NP_651323.3 Gene:bai / 42996 FlyBaseID:FBgn0045866 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_080385.2 Gene:Tmed11 / 67366 MGIID:1914616 Length:215 Species:Mus musculus


Alignment Length:222 Identity:53/222 - (23%)
Similarity:93/222 - (41%) Gaps:32/222 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IVCLLMACAWS-SHAVMFKLSPNTQKCLKEDIQANQLVMGEFEV-----------SDVPGQIIDY 59
            |..:|:..::| |.|..|......:||:.|||.::.|:.|.|:|           ...||..:..
Mouse     3 IQTILLCFSFSFSAAFYFHAGEREEKCIIEDIPSDTLITGTFKVQQWDIVRHDFLESAPGLGMFV 67

  Fly    60 IARDTKGHILSQKEHITKGKFSFMSEVYDTYEIC-------FI----SKVPAHQRGVIQEVSLLT 113
            ........:|..|.:..:|.|.|.|.....:.||       |:    ||:..|         |..
Mouse    68 TVTTYNDEVLLSKLYGAQGTFYFTSHSSGEHIICLESNSTQFVSFGGSKLRIH---------LDI 123

  Fly   114 KKGVETKSYEGIGEASKLKPLEVDLKRLEDLSDSIVRDFVLMRKREEEMRDTNEKTNSRVLFFSI 178
            :.|........:....|:..:...|:.|.:..:.|:::....|.|||..|.|:|.||..||:::.
Mouse   124 RVGEHDLDAAIVQAKDKVNEVTFKLQHLIEQVEQILKEQDYQRDREENFRITSEDTNRNVLWWAF 188

  Fly   179 FSMCCLLGLATWQVLYLRRYFKAKKLI 205
            ..:...:.:..:|:.:|:.:|.||||:
Mouse   189 AQILIFISVGIFQMKHLKDFFIAKKLV 215

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
baiNP_651323.3 EMP24_GP25L 20..200 CDD:279450 44/201 (22%)
Tmed11NP_080385.2 EMP24_GP25L 17..209 CDD:279450 44/200 (22%)
COPI vesicle coat-binding. /evidence=ECO:0000255 208..215 4/6 (67%)