DRSC/TRiP Functional Genomics Resources

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Protein Alignment bai and tmed4

DIOPT Version :9

Sequence 1:NP_651323.3 Gene:bai / 42996 FlyBaseID:FBgn0045866 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_001002134.1 Gene:tmed4 / 415224 ZFINID:ZDB-GENE-040625-140 Length:220 Species:Danio rerio


Alignment Length:214 Identity:59/214 - (27%)
Similarity:104/214 - (48%) Gaps:17/214 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VCLLMACAW--SSHAVMFKLSPNTQKCLKEDIQANQLVMGEFE-----------VSDVPGQIIDY 59
            |..|:...|  .|.|:.|.:....:||..|:|....:|:|.:.           :...||..:..
Zfish     8 VGFLLLFVWLSPSQALYFHIGETEKKCFIEEIPDETMVIGRYRTQLWDKQAGSFLPSTPGLGMHV 72

  Fly    60 IARDTKGHILSQKEHITKGKFSFMSEVYDTYEICFIS---KVPAHQRGVIQEVSLLTKKGVETKS 121
            ..:|.:..::..:::.:.|:|:|.|.....::||..|   |:.....|.:: |.|..:.|..|.:
Zfish    73 EIKDPETKVILSRQYGSDGRFTFTSHTPGEHQICLHSNSTKMALFAGGKLR-VHLDIQVGEHTNN 136

  Fly   122 YEGIGEASKLKPLEVDLKRLEDLSDSIVRDFVLMRKREEEMRDTNEKTNSRVLFFSIFSMCCLLG 186
            |..|....||..|::.:::|.|..:.|.::....|.|||..|.|:|.||.|||::||.....|:.
Zfish   137 YPEIAAKDKLTELQLRVRQLLDQVEQIQKEQNYQRYREERFRMTSESTNQRVLWWSIAQTVILII 201

  Fly   187 LATWQVLYLRRYFKAKKLI 205
            ...||:.:|:.:|:||||:
Zfish   202 TGIWQMKHLKSFFEAKKLV 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
baiNP_651323.3 EMP24_GP25L 20..200 CDD:279450 50/193 (26%)
tmed4NP_001002134.1 EMP24_GP25L 22..215 CDD:279450 50/193 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53581
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X178
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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