DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bai and Tmed4

DIOPT Version :10

Sequence 1:NP_651323.3 Gene:bai / 42996 FlyBaseID:FBgn0045866 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_001385993.1 Gene:Tmed4 / 305502 RGDID:1306319 Length:227 Species:Rattus norvegicus


Alignment Length:214 Identity:56/214 - (26%)
Similarity:105/214 - (49%) Gaps:15/214 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FIVCLLMACAWSSHAVMFKLSPNTQKCLKEDIQANQLVMGEFE-----------VSDVPGQIIDY 59
            |::.:|..||..:..:.|.:....::|..|:|....:|:|.:.           :...||..:..
  Rat    15 FVLLVLTVCAAGARGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHV 79

  Fly    60 IARDTKGHILSQKEHITKGKFSFMSEVYDTYEICFIS---KVPAHQRGVIQEVSLLTKKGVETKS 121
            ..:|..|.::..:::.::|:|:|.|.....::||..|   ::.....|.:: |.|..:.|....:
  Rat    80 EVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLR-VHLDIQVGEHANN 143

  Fly   122 YEGIGEASKLKPLEVDLKRLEDLSDSIVRDFVLMRKREEEMRDTNEKTNSRVLFFSIFSMCCLLG 186
            |..|....||..|::..::|.|..:.|.::....|.|||..|.|:|.||.|||::||.....|:.
  Rat   144 YPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILIL 208

  Fly   187 LATWQVLYLRRYFKAKKLI 205
            ...||:.:|:.:|:||||:
  Rat   209 TGIWQMRHLKSFFEAKKLV 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
baiNP_651323.3 EMP24_GP25L 20..200 CDD:426051 47/193 (24%)
Tmed4NP_001385993.1 EMP24_GP25L 29..222 CDD:426051 47/193 (24%)

Return to query results.
Submit another query.